View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-4 (Length: 307)
Name: NF1271-Insertion-4
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 1465034 - 1465167
Alignment:
| Q |
174 |
tattgaaaattaataggattaagttgttaacataagatctttacattttagattttctatatcaaaccttgttttttcatgtctttccatcccttttctt |
273 |
Q |
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| T |
1465034 |
tattgaaaattaataggatcaagttgttaacataagatctttacattttagattttctatatcaaaccttgttttttcatgtctttccatcccttttctt |
1465133 |
T |
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| Q |
274 |
tctctcttagataattactcagcatatttcttta |
307 |
Q |
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| T |
1465134 |
tctctcttagataattactcaacatatttcttta |
1465167 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 1464864 - 1464929
Alignment:
| Q |
7 |
agctattttattggttttttctctttctcatctaagcttagataagatattagtatctaacaagaa |
72 |
Q |
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| T |
1464864 |
agctattttattggttttttctctttctcatctaagcttagataagatattagtatctaacaagaa |
1464929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 26792673 - 26792767
Alignment:
| Q |
174 |
tattgaaaattaataggattaagttgttaacata--agatctttacatttt-agattttctatatcaaaccttgttttttca-tgtctttccatc |
264 |
Q |
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| T |
26792673 |
tattgaaaatttacagcattaagttgttaacatataagatctttacatttttagatttcctatatcaaaccttgttttttcattgtctttccatc |
26792767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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