View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-5 (Length: 660)
Name: NF1271-Insertion-5
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 31225392 - 31225958
Alignment:
| Q |
8 |
caaccttccactttcgaccaaactaagttatcagaagaaatttccaaggtgggattctgcaccggaagagacaagattgcatcccatctagccattgtca |
107 |
Q |
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| T |
31225392 |
caaccttccactttcgaccaaactaagttatcagaagaaatttccaaggtgggattctgcaccggaagagacaagattgcatcccatctagccattgtca |
31225491 |
T |
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| Q |
108 |
ctgaaggctaaatgaaatcttcctgtaatagatagatggttacgatttaaaagtcattaccaatggacttagcattattatggtggggtcgaacctccaa |
207 |
Q |
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| T |
31225492 |
ctgaaggctaaatgaaatcttcctgtaatagatagatggttacgatttaaaagtcattaccaatggacttagcattattatggtggggtcgaacctccaa |
31225591 |
T |
|
| Q |
208 |
agaaaccacaagcaagtataaaccaacacaactagttacgtgtgtgttcggagactcgttgatctaaaacctaacaagattcgaatgcgtgttttgttgt |
307 |
Q |
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| T |
31225592 |
agaaaccacaagcaagtataaaccaacacaactagttacgtgtgtgttcggagactcgttgatctaaaacctaacaagattcgaatgcgtgttttgttgt |
31225691 |
T |
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| Q |
308 |
gttgtgtggtaggaaattagtgtaacaatggtagaaacttaacttcaattcaattaaaaataaatatacatcgtaaaacaataatctgaagaaagtttca |
407 |
Q |
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| T |
31225692 |
gttgtgtggtaggaaattagtgtaacaatggtagaaacttaacttcaattcaattaaaaataaatatacatcgtaaaacaataatctgaagaaagtttca |
31225791 |
T |
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| Q |
408 |
ttgatttcaatttccgtacaagaggaagcgattacctgagcaataatgtgagcgactgaacaagcgaggatgctgcacgcaacagagtcagtcagagtga |
507 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31225792 |
ttgatttcaatttccgtacaaaaggaagcgattacctgagcaataatgtgagcgactgaacaagcgaggatgctgcacgcaacagggtcagtcagagtga |
31225891 |
T |
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| Q |
508 |
tatcaagttgtgagagagaaacacttggttttgtgattttgtcctatcccatttctctactttgttgtc |
576 |
Q |
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| T |
31225892 |
tatcaagttgtgagagagaaacacttggttttgtgattttgtcctatcccatt--tctactttgttgtc |
31225958 |
T |
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