View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-6 (Length: 821)
Name: NF1271-Insertion-6
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0940 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 7 - 821
Target Start/End: Original strand, 31809392 - 31810206
Alignment:
| Q |
7 |
actttgtattatgttgctaccatttttgtgtcacgcgtatttttcatttcactgtaccttagttctaattgcattttttatttccattattttgaattac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31809392 |
actttgtattatgttgctaccatttttgtgtcacgcgtatttttcatttcactgtaccttagttctaattgcattttttatttcaattattttgaattac |
31809491 |
T |
|
| Q |
107 |
tataagaggagaatgtgatgactgaatttatttaattgcaaataaacttgtttgatgatgacttcaaccaagtctttaccgggtcaaaggtattcgctgc |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809492 |
tataagaggagaatgtgatgactgaatttgtttaattgcagataaacttgtttgatgatgacttcaaccaagtctttaccgggtcaaaggtattcgctgc |
31809591 |
T |
|
| Q |
207 |
tgctggtatgctgtttctttggtttaacatgcatgtttgcttttataccaactctacaacttccttatcagagagagacagatagtagtattagtaagag |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31809592 |
tgctggtatgctgtttctttggtttaacatgcatgtttgcttttataccaactctacaacttccgtatcagagagagacagatagtagtattagtaagag |
31809691 |
T |
|
| Q |
307 |
taccggccgttttgatccatggttcataggaaacaatgttgttaaataaaagctatagcgacggtatagcacagcggaatttggacaaaccgttgttgtt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809692 |
taccggccgttttgatccatggttcatagaaaacaatgttgttaaataaaagctatagcgacggtatagcacagcggaatttggacaaaccgttgttgtt |
31809791 |
T |
|
| Q |
407 |
tcttcatacgctatttagtacaaaatgttgtcaaatgactgctacagtgacacattagcacaattgcatagggtaattttaacaatcctctgtccccaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809792 |
tcttcatacgctatttagtacaaaatgttgtcaaataactgctacagtgactcattagcacaattgcatagggtaattttaacaatcctctgtccccaat |
31809891 |
T |
|
| Q |
507 |
tgacaac-attggaaacaccctcttaacctcccttctgcgtgaggatgagctcaatgttttgggcattattggaatttatcatcatttatagagaaaaac |
605 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809892 |
tgacaacgattggaaacaccctcttaacctcccttctgcgtgaggacgagctcaatgttttgggcattattggaatttatcatcatttatagagaaaaac |
31809991 |
T |
|
| Q |
606 |
tcaatttctcactcgttcatgaccaaactaagtgtatgtttggtttactgttaaaaaatttgacccaaagtatctaaagttcttttgaatgaatgttcat |
705 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809992 |
tcaatttctcact-gttcatgaccaaactaagtgtatgtttggtttactgttaaaaaacttgacccaaagtatctaaagttcttttgaatgaatgttcat |
31810090 |
T |
|
| Q |
706 |
gtttgtaactgaaatccaaacttacaatcataggcacctgcctgttatttccggctattgaccacagttatctggcttagctttcagaaaaccctttatt |
805 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31810091 |
gtttgtaactgaaatccaaacttacaatcataggcacctgcctgttatttccggctattgaccacagttatctggcttagctttcagcaaaccctttatt |
31810190 |
T |
|
| Q |
806 |
gatgcatagcgtggtt |
821 |
Q |
| |
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|||||||||||||||| |
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| T |
31810191 |
gatgcatagcgtggtt |
31810206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 371 - 442
Target Start/End: Original strand, 21226912 - 21226983
Alignment:
| Q |
371 |
tatagcacagcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
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||||||| ||||||||||| ||||| | | ||||| || ||||||||||| |||||||||||||||||||| |
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| T |
21226912 |
tatagcatagcggaatttgaacaaaaagctattgttcctccatacgctattcagtacaaaatgttgtcaaat |
21226983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 45371163 - 45371101
Alignment:
| Q |
380 |
gcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
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|||||||||||||||||| | ||||| | ||| ||||||||||||||||||||||||||| |
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| T |
45371163 |
gcggaatttggacaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaat |
45371101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 7430113 - 7430176
Alignment:
| Q |
379 |
agcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
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|||||||||||||||||||| | ||||| | |||||||||||||||||| |||||||||||| |
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| T |
7430113 |
agcggaatttggacaaaccgctattgttccacaatacgctatttagtacaagatgttgtcaaat |
7430176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 443
Target Start/End: Original strand, 35713289 - 35713320
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaatg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
35713289 |
atacgctatttagtacaaaatgttgtcaaatg |
35713320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 13996407 - 13996378
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
13996407 |
atacgctatttagtacaaaatgttgtcaaa |
13996378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 4762617 - 4762554
Alignment:
| Q |
379 |
agcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||| |||||||||||||||| ||| | | ||||||||||||||||||||||||||||||| |
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|
| T |
4762617 |
agcggcatttggacaaaccgttattgctccgcaatacgctatttagtacaaaatgttgtcaaat |
4762554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 442
Target Start/End: Original strand, 34581607 - 34581637
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34581607 |
atacgctatttagtacaaaatgttgtcaaat |
34581637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0940 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0940
Description:
Target: scaffold0940; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 493
Target Start/End: Original strand, 2041 - 2155
Alignment:
| Q |
379 |
agcggaatttggacaaaccgttgttgtttcttc-atacgctatttagtacaaaatgttgtcaaatgactgctacagtgacacattagcacaattgcatag |
477 |
Q |
| |
|
|||| |||||||||||||| |||||||| || | ||| |||||||| |||||| ||||||||||| |||||| ||||| | |||||| ||||||||| |
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| T |
2041 |
agcgaaatttggacaaaccattgttgtt-ctgcgatatgctatttaatacaaagtgttgtcaaatagctgctatggtgacgccatagcactattgcatag |
2139 |
T |
|
| Q |
478 |
ggtaattttaacaatc |
493 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
2140 |
aggacttttaacaatc |
2155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 54842270 - 54842199
Alignment:
| Q |
371 |
tatagcacagcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||| |||||||||| || |||||| | ||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
54842270 |
tatagcatagcggaatttagagaaaccgctattgttctgtgatacgctatttagtataaaatgttgtcaaat |
54842199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 2991015 - 2990985
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2991015 |
atacgctatttagtacaaaatgttgtcaaat |
2990985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 442
Target Start/End: Complemental strand, 33123579 - 33123481
Alignment:
| Q |
344 |
gttgttaaataaaagctatagcgacggtatagcacagcggaatttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||||||| |||||||| | | ||||||| |||||||||| ||||||||| | ||||| | | ||| ||||| | |||||||||| |||||||| |
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| T |
33123579 |
gttgttaaatagcagctatagtggccctatagcatagcggaatttagacaaaccgctattgttccataatatgctatgtggtacaaaatgctgtcaaat |
33123481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 51295690 - 51295736
Alignment:
| Q |
392 |
caaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtc |
438 |
Q |
| |
|
|||| |||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
51295690 |
caaatcgttattgtttcgtgatacgctatttagtacaaaatgttgtc |
51295736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 25252041 - 25252094
Alignment:
| Q |
385 |
atttggacaaaccgttgttgtttcttcatacgctatttagtacaaaatgttgtc |
438 |
Q |
| |
|
||||| ||||| || | ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
25252041 |
atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtc |
25252094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 442
Target Start/End: Original strand, 9163784 - 9163814
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9163784 |
atacgctatttagtacaaaatgttgtcaaat |
9163814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 442
Target Start/End: Original strand, 36300410 - 36300440
Alignment:
| Q |
412 |
atacgctatttagtacaaaatgttgtcaaat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36300410 |
atacgctatttagtacaaaatgttgtcaaat |
36300440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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