View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-7 (Length: 699)
Name: NF1271-Insertion-7
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Original strand, 7932241 - 7932802
Alignment:
| Q |
7 |
aacaatgagacgttgtctcatatagaagtgaaagtttatgatcgtatttggccttacgcccgagtcmttactttgattgaaaccgattcaacacaagcaa |
106 |
Q |
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| T |
7932241 |
aacaatgagatgttgtctcatatagaagtgaaagtttatgatcttatttggccttacgcctgagtcattactttgattgaaaccgattcaacacaagcaa |
7932340 |
T |
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| Q |
107 |
tgaaaaatgaatatgcattcaaaattcaactcatttttcctcttcaattttgttaaatgctatcaagaatcgttccaatttaagaacgaagaggaccgtg |
206 |
Q |
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| T |
7932341 |
tgaaaaatgaatatgcattcaaaattcaactcattttttctcttcaattttgttgaatactatcaagaatcgttccaatttaagaacgaagaggaccgtg |
7932440 |
T |
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| Q |
207 |
aaaacttttaatcctccatctaatgagggagctaacccaaactttactagagaggtgaatataaagaaaaattaaaatatatttgtatgaatcttatctt |
306 |
Q |
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| T |
7932441 |
aaaacctctaatcctccatctaatgagggagctaacccaaactttactagagaggtgaatataaagaaaaaataaaatatatttttatgaatcttatctt |
7932540 |
T |
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| Q |
307 |
aacaa-ttttgtagttgattgaactctttgtgtaattattatagacagaaattgtaaaaacaaagataaatttatctattaagtactacta--------- |
396 |
Q |
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| T |
7932541 |
aacaatttttgttgttgattgaactctttgtgtaattattatagacagaaattgtaaaaacaaagataaatttatctattaagtactactattaattttg |
7932640 |
T |
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| Q |
397 |
-------ttatttctactaatttttcgcaaataagtttatgcgagctaactaaattagactaaatataaaattacaccaatttatt--nnnnnnnnnnnn |
487 |
Q |
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| T |
7932641 |
tctttttttatttctactaatttttcgcaaataagtttatgcgagctaactaaattagattaaatataaaattacaccaatttattaaaaaaaaagaaaa |
7932740 |
T |
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| Q |
488 |
nngtggtagctaaggttaccccaaagtacttgactaccatggtcccactgtctatctgtcaa |
549 |
Q |
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| T |
7932741 |
aagtggtagctaaggttaccccaaagtacttgactaccatggtcccactgtctatctgtcaa |
7932802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 7935219 - 7935369
Alignment:
| Q |
541 |
atctgtcaaacgttgtcactgtgtgttagtgtgcacaagaagccatggtttcgtg--gatgtaaatttgaggaatggagtaaaagaacgtttaagtgtga |
638 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
7935219 |
atctgtcaaacgttgtcactgtgtgttagtgtgtacaagaagccatggtttcgtgtggatgtaaatttgaggaatggagtaaaagaacgtatgagtgtga |
7935318 |
T |
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| Q |
639 |
atgtttaattgctcttgaccaatataagcacaagacattaatccaaggagt |
689 |
Q |
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| T |
7935319 |
atgtttaactgctcttgaccattataagcacaagacattaatccaaggagt |
7935369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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