View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-9 (Length: 423)
Name: NF1271-Insertion-9
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 36622556 - 36622180
Alignment:
| Q |
8 |
cacgaaagttgatgagatggttaaagaaggaacaacaagattgccaaaaaggatatctctaaagaaatctgtgagcatatgtgacaatgtggaacagatt |
107 |
Q |
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| T |
36622556 |
cacgaaagttgatgagatggttaaagaaggaacaacaagattgccaaaaaggatatctctaaagaaatctgtgagcatatgtgacaatgtggaacagatt |
36622457 |
T |
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| Q |
108 |
ctgccaaataaaaagatcaaaaagaggagcaagtccttccaaaagtcaagctccttggatcnnnnnnnnnnnnnnnnnnnnccaaagcctctgcgatcaa |
207 |
Q |
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| T |
36622456 |
ctgccaaataaaaagatcaaaaagaggagcaagtccttccaaaagtcaagctccttggatcaagaagaagaagaagaa---ccaaagcctttgcgatcaa |
36622360 |
T |
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| Q |
208 |
ttctgaaagtgggttctgatctcaatgaccaatccaattcaatttgttgattatatatctaggctgtaataatatgagcagcaataatatatgtcatgaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36622359 |
ttctgaaagtgggttctgatctcaatgaccaatccaattcaatttgttgattatatatctaggctgtaataatatgagcagcaataatatatgtcatgaa |
36622260 |
T |
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| Q |
308 |
acagcagagtagctgttatgaatgtggtgctt-ggccttgcaatctcttcatgcatcgagaattcaatagtagcttctttc |
387 |
Q |
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| T |
36622259 |
aca-cagagtagctgttatgaatgtggtgcttgggccttgcaatctcttcatgcattgagaattcaatagtagcttctttc |
36622180 |
T |
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