View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12710_high_13 (Length: 329)
Name: NF12710_high_13
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 32166650 - 32166920
Alignment:
| Q |
18 |
atacaacaaattagtgagctcacctactagtgcggcgataccttattatcaaaaggaatccctaatatgctggcattgttcccactccaaatatgttaga |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166650 |
atacaacaaattagtaagctcacctactagtgcggcgataccttattatcaaaaggaatccctaatatgctggcattgttcccactccaaatatgttaga |
32166749 |
T |
|
| Q |
118 |
agctataaattgaaagcaaagcattgtacgacatagtattagnnnnnnntgttgatagtgaaaacaaagactcaactgaaacacaaaatcagggatggtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166750 |
agctataaattgaaagcaaagcattgtacaacatagtattagaaaaaaatgttgatggtgaaaacaaagactcaactgaaacacaaaatcagggatggtc |
32166849 |
T |
|
| Q |
218 |
aactgttcacgaggtacatatctaaagagctgcagaagtcgatcaacatatacttctttcttccaaacctg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32166850 |
aactgttcacgaggtacatatctaaagagctgcagaagtcgatcaacatatactactttcttccaaacctg |
32166920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 19138463 - 19138567
Alignment:
| Q |
183 |
aaagactcaactgaaacacaaaatcagggatggtcaactgttcacgaggtacatatctaaagagctgcagaagtcgatcaacatatacttctttcttcca |
282 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
19138463 |
aaagactcaactgaaaaacaaaatctgggatggtcaactgctcacgcggtacatatctgaagagctgcagaagtctatcagcatataccactttcttcca |
19138562 |
T |
|
| Q |
283 |
aacct |
287 |
Q |
| |
|
||||| |
|
|
| T |
19138563 |
aacct |
19138567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University