View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_high_14 (Length: 320)
Name: NF12710_high_14
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 327355 - 327664
Alignment:
| Q |
1 |
ttgatagaatattacatgtaatataaaagagtcagaggtttggatttctttcttattcaccttattagtgaatttcctgacattagactatttgatataa |
100 |
Q |
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| T |
327355 |
ttgataggatattacatgtaatataaaagggtcagaggtttggatttctttcttattcaccttattagtgaatttcctgacattagactatttgatataa |
327454 |
T |
|
| Q |
101 |
ataaaaaatgaaccagacacatccatagttttagattgggatgttgatgtggtcgtggctatggttgcagtgcaacatagtgttgttgtagacattacta |
200 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327455 |
ataaaaaatgcacgagacacatccatagttttaaattgggatgttgatgtggtcgtggctatggttgcagtgcaacatagtgttgttgtagacattacta |
327554 |
T |
|
| Q |
201 |
ccacaatttaaaaccatggaaccagctcc-----aatgcggttcacaatttggaataatgattannnnnnnaacaagaaattaatgatgttatgttattg |
295 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
327555 |
ccacaatttaaaaccatggaaccagctccaatgaaatgcggttcacaatttagaataatgattatttttttaacaagaaattaatgatattatgttattg |
327654 |
T |
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| Q |
296 |
tcataatttt |
305 |
Q |
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|||||||||| |
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| T |
327655 |
tcataatttt |
327664 |
T |
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