View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_high_6 (Length: 511)
Name: NF12710_high_6
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_high_6 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 11631781 - 11632245
Alignment:
| Q |
20 |
ccaacccccaatgtcgttcccattatcctatggaagctttgtttcccacccccaaccccaatgttcataaatacctcaattctcnnnnnnnnnnnnngga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11631781 |
ccaacccccaatgtcgttcccattatcctatggaagctttgtttcccacccccaaccccaatgttcataaatacctcaattctcttttttctttttttga |
11631880 |
T |
|
| Q |
120 |
caaaattactcttcttttcaagtaggcttgcagatggaatttgtctgaaagtatatttttgaacatgttttgttttatttttggcgtaattccgatatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11631881 |
caaaattactcttcttttcaagtaggcttgcagatggaatatgtctgaaagtatatttttgaacatgttttgttttatttttggcgtaattccgatatcc |
11631980 |
T |
|
| Q |
220 |
tccgcacgcaacttgcggagagtaatatctcgagtcttacaagacccaaatggatggcgcgtaacttgcgaagactaatacattgagtcttacaaatctc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
11631981 |
tccgcacgcaacttgcggagagtaatatctcgagtcttacaagacccaaatggatggcgcgcagcttgcgaagactaatacattgagtcttacaaatctc |
11632080 |
T |
|
| Q |
320 |
aaagacaagatgtgaaagagatcaagtcaagttgttaggagattaactcacagctacagagttagaagtgatctgatttttcct---aagttaataagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |
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| T |
11632081 |
aaagacaagatgtgaaagagatcaagtcaagttgttaggagattaactcacagctatagagttagaagtcaactgatttttcctagcaagttaataagtt |
11632180 |
T |
|
| Q |
417 |
ttttattagagttaattctatcattaatagttttattacagagttattttggcagatttaaacta |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11632181 |
ttttattagagttaattctatcattaatagttttattacagagttattttggcagatttaaacta |
11632245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 352 - 511
Target Start/End: Original strand, 3814018 - 3814180
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
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|||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3814018 |
tgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagtt |
3814117 |
T |
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| Q |
449 |
ttattacagagttattttggcagatttaaactagnnnnnnngtcaactgtgtttatctatata |
511 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3814118 |
ttattacagagttattttggcagatttaaactagtttttttgtcaactgtgtttatctatata |
3814180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 351 - 511
Target Start/End: Original strand, 3811185 - 3811348
Alignment:
| Q |
351 |
ttgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagt |
447 |
Q |
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||||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3811185 |
ttgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagt |
3811284 |
T |
|
| Q |
448 |
tttattacagagttattttggcagatttaaactagnnnnnnngtcaactgtgtttatctatata |
511 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
3811285 |
tttataacagagttattttggcagatttaaactagtttttttgtcaactgtgtttttctatata |
3811348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 32703524 - 32703609
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttcct---aagttaataagttttttattagagttaattct |
435 |
Q |
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|||||||||||||||||||||||| | |||||||||| | ||| ||||| || |||||||| ||||||||||||||||||||||| |
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| T |
32703524 |
tgttaggagattaactcacagctatacagttagaagtcaactggtttttactagcaagttaat-agttttttattagagttaattct |
32703609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 34946529 - 34946489
Alignment:
| Q |
217 |
tcctccgcacgcaacttgcggagagtaatatctcgagtctt |
257 |
Q |
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|||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
34946529 |
tcctccgctcgcaacttgcggagactaatttctcgagtctt |
34946489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 43141582 - 43141701
Alignment:
| Q |
351 |
ttgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagt |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43141582 |
ttgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagt |
43141681 |
T |
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| Q |
448 |
tttattacagagttattttg |
467 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43141682 |
tttattacagagttattttg |
43141701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 39398115 - 39398233
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39398115 |
tgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagtt |
39398214 |
T |
|
| Q |
449 |
ttattacagagttattttg |
467 |
Q |
| |
|
||||||||||||||||||| |
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| T |
39398215 |
ttattacagagttattttg |
39398233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 39400003 - 39400121
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39400003 |
tgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagtt |
39400102 |
T |
|
| Q |
449 |
ttattacagagttattttg |
467 |
Q |
| |
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||||||||||||||||||| |
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| T |
39400103 |
ttattacagagttattttg |
39400121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 41406695 - 41406813
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
41406695 |
tgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaataatt |
41406794 |
T |
|
| Q |
449 |
ttattacagagttattttg |
467 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
41406795 |
ttattacagaattattttg |
41406813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 41408185 - 41408303
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41408185 |
tgttaggagattaactcacagctatagagttagaagtcaactggtttttactagcaagttaataagttttttattagagttaattctgtcattaatagtt |
41408284 |
T |
|
| Q |
449 |
ttattacagagttattttg |
467 |
Q |
| |
|
||| ||| ||||||||||| |
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| T |
41408285 |
ttactacggagttattttg |
41408303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 25739239 - 25739182
Alignment:
| Q |
215 |
tatcctccgcacgcaacttgcggagagtaatatctcgagtcttacaagacccaaatgg |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||||| ||||||||||| |
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| T |
25739239 |
tatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgg |
25739182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 481
Target Start/End: Original strand, 79485 - 79616
Alignment:
| Q |
352 |
tgttaggagattaactcacagctacagagttagaagtgatctgatttttccta---agttaataagttttttattagagttaattctatcattaatagtt |
448 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||| | ||||||||| ||| |||||||| |||||||||||||||||||| | |||||||||||| |
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| T |
79485 |
tgttaggagattaactcacaactatacagttagaagtcaactgatttttactagcaagttaata-gttttttattagagttaattatgtcattaatagtt |
79583 |
T |
|
| Q |
449 |
ttattacagagttattttggcagatttaaacta |
481 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |
|
|
| T |
79584 |
ttattacagagttattttgacagatttgaacta |
79616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 80897 - 80974
Alignment:
| Q |
404 |
aagttaataagttttttattagagttaattctatcattaatagttttattacagagttattttggcagatttaaactag |
482 |
Q |
| |
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||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
80897 |
aagttaata-gttttttattagagttaattatgtcattaatagttttattacagagttattttggcagatttgaactag |
80974 |
T |
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