View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_high_8 (Length: 412)
Name: NF12710_high_8
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 33677120 - 33676718
Alignment:
| Q |
19 |
aaggaagatcctccaagagaaaacattgagtgcaccaaatcatgaaccaaagtatggaacaa---------------gcaaaataaataattaaagaatg |
103 |
Q |
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| T |
33677120 |
aaggaagatcctccaagagaaaacattgagtgcaccaaatcatgaaccaaagtatggaacaatcaaaaagaaaacaagcaaaataaataattaaagaatg |
33677021 |
T |
|
| Q |
104 |
ctagcaacatactctttattgtttgatgaaattcatgcagaccacatcagttaagaagtgagacccacacgacttagtgggacacgtgcatttagcccaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33677020 |
ctagcaacatactctttattgtttgatgaaattcatgcagaccacatcagttaagaagtgagacccacacgacttagtgggacatgtgcatttagcccaa |
33676921 |
T |
|
| Q |
204 |
taataaacaatgtgacagaaaatgtattgttagcctttctttgaataatttagtccatgagtgaatactattcaataatttaggctgtgagtgtgtgcta |
303 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33676920 |
taataaataatgtgacagaaaatgtattgttagcctttctttgaataatttagtccatgagtgaatactattcaataatttaggctgtgagtgtgtgcta |
33676821 |
T |
|
| Q |
304 |
ttcaataacaaaagaacctatggcaaccattttatcaactacaagatttagatgctaaaataatatctttgaaaatttggggcatcttagccatctctgc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
33676820 |
ttcaataacaaaagaacctatggcaaccattttatcaactacaagatttagatgctaaaataatatctttgaaaatttggggcatcttagctatctctcc |
33676721 |
T |
|
| Q |
404 |
tcc |
406 |
Q |
| |
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||| |
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| T |
33676720 |
tcc |
33676718 |
T |
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