View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_high_9 (Length: 381)
Name: NF12710_high_9
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 369
Target Start/End: Complemental strand, 41448692 - 41448347
Alignment:
| Q |
24 |
cttctgaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagac |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448692 |
cttctgaaattaaaaactaagggaaaagatgggaaatgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagac |
41448593 |
T |
|
| Q |
124 |
tagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagcctagaagtgaaaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448592 |
tagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagcctagaagtgaaaa |
41448493 |
T |
|
| Q |
224 |
caaaaacatagtaaggcaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattactaacatagtaacatagtatt |
323 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448492 |
caaaaacatagtaaggcaaacttgtattgtctgcacacccgaaaataaacccacctagttttccaatcataactaattactaacatagtaacatagtatt |
41448393 |
T |
|
| Q |
324 |
attgaaactgtggttttaaatgtagggatttatactaattcagtga |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448392 |
attgaaactgtggttttaaatgtagggatttatactaattcagtga |
41448347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 348
Target Start/End: Complemental strand, 41459031 - 41458707
Alignment:
| Q |
24 |
cttctgaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagac |
123 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| | ||| ||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||| |
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| T |
41459031 |
cttccgaagttaaaagctaagggaaaagatgggaaaggaataataactcactcctgaacaagtgattctccaagcttccacgaggcataaactcatagac |
41458932 |
T |
|
| Q |
124 |
tagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagcctagaagtgaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41458931 |
gagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccatggtagtttacttcagcctagaagtgaaaa |
41458832 |
T |
|
| Q |
224 |
caaaaacatagtaaggcaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattactaacatagtaacatagtatt |
323 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41458831 |
cagaaacatagtaagacaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattactaacatagtaacatagtatt |
41458732 |
T |
|
| Q |
324 |
attgaaactgtggttttaaatgtag |
348 |
Q |
| |
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| ||||||||||||||||||||||| |
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|
| T |
41458731 |
actgaaactgtggttttaaatgtag |
41458707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 65 - 273
Target Start/End: Complemental strand, 41442218 - 41442011
Alignment:
| Q |
65 |
aataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatc |
164 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
41442218 |
aataacttactcctgaacaagtgattctccaagcttccacgaggcataaactcatagacgagaagacggtgttcatcttcaaggcaataaccgatcaatc |
41442119 |
T |
|
| Q |
165 |
tcactaaatgaggatgagaaaaccttccaaggtagttgacttcagcctagaagtgaaaacaaaaacatagtaaggcaaacttgtattgtctgcacaccca |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||| |||| |
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|
| T |
41442118 |
tcactaaatgaggatgagaaaactgtccaagatagttgacttcagcctaaaagtgaaaac-aaaacatattaaggcaaacatgtattgtctgcaatccca |
41442020 |
T |
|
| Q |
265 |
aaaataaac |
273 |
Q |
| |
|
|| |||||| |
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|
| T |
41442019 |
aacataaac |
41442011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 23828679 - 23828574
Alignment:
| Q |
80 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
179 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| ||||| | ||||| | || ||||| |||||| |||||||| |||||| |||||| |||||||| |
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|
| T |
23828679 |
aacaagtgattctccaagctgccacgtggcataaattcataaatcagaaggctgttttcatcttcaagacaataaccaatcaatttcactagatgaggat |
23828580 |
T |
|
| Q |
180 |
gagaaa |
185 |
Q |
| |
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| |||| |
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|
| T |
23828579 |
gtgaaa |
23828574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 23824751 - 23824651
Alignment:
| Q |
80 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
179 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| |||||||| | ||| | | ||||| |||||| |||||||| |||||| |||||| |||||||| |
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|
| T |
23824751 |
aacaagtgattctccaagctgccacgtggcataaattcatagaccaaaaggctattttcatcttcaagacaataaccaatcaatttcactagatgaggat |
23824652 |
T |
|
| Q |
180 |
g |
180 |
Q |
| |
|
| |
|
|
| T |
23824651 |
g |
23824651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 23832522 - 23832417
Alignment:
| Q |
80 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
179 |
Q |
| |
|
|||||||||||||||||| | ||| | ||| || ||| |||| ||||||| || |||| ||||||||||||||| |||||| | | || |||||||| |
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|
| T |
23832522 |
aacaagtgattctccaagttgccacgaggcatgaattcaaagacaagaagactgttgtcatcttcaaggcaataaccaatcaatttgattagatgaggat |
23832423 |
T |
|
| Q |
180 |
gagaaa |
185 |
Q |
| |
|
|||||| |
|
|
| T |
23832422 |
gagaaa |
23832417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 10845211 - 10845240
Alignment:
| Q |
73 |
acttctaaacaagtgattctccaagcttcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10845211 |
acttctaaacaagtgattctccaagcttcc |
10845240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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