View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_1 (Length: 913)
Name: NF12710_low_1
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 13 - 645
Target Start/End: Original strand, 10368937 - 10369568
Alignment:
| Q |
13 |
cacagacataaagatgcagagtgtgcgaagcaggttacctcaactctatgggagtagcaatgccgtttgcaagcaatataatgggagcgttaatacgcga |
112 |
Q |
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| T |
10368937 |
cacagacataaagatgcagagtgtgcgaagcaggttacctcaactctatgggagtagcaatgccgtttgcaagcaatataatgggagcgttaatacgcga |
10369036 |
T |
|
| Q |
113 |
ttcaagcatcgctatggcaataccgcagaggaacacagtgacacctgtttcaaaagcactttttaaaacagactttatttttacatataattcatatcgg |
212 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10369037 |
ttcaagcatcgctatggcaataccgcataggaacacagtgacacctgtttcaaaagcactttttaaaacagactttatttttacatataattaatatcgg |
10369136 |
T |
|
| Q |
213 |
ataggtcatcacattcacatcaaagacagaaaatctcataaaaatgggccaaattaaaacgtaaaaccacggaacaagtctggcaaagcattatcaagga |
312 |
Q |
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| T |
10369137 |
ataggtcatcacattcacatcaaagacagaaaatctcataaaaatgggccaaattaaaacgtaaaaccacggaacaagtctggcaaagcattatcaagaa |
10369236 |
T |
|
| Q |
313 |
ctacctccgacaatacatttcataggttcaacagatcattaataaaagatacaatgcatctgcccttttccatgccaaaaactactttcatgaagggaac |
412 |
Q |
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| T |
10369237 |
ctacctcctacaatacatttcataggttcaacagatcattaataaaagatacaat-aatctgcccttttccatgccaaaaactactttcatgaagggaac |
10369335 |
T |
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| Q |
413 |
ttcatatgctgcacaataacctacattttagggaccaagttaagaaaagtatattcgtccctcaattttgaaacaatgtataccattgaatgtcaaaaca |
512 |
Q |
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| T |
10369336 |
ttcatatgctgcacaataacctacattttagggaccaagttaagaaaagtatattcgtcccttaattttgaaacaatgtataccattgaatgtcaaaaca |
10369435 |
T |
|
| Q |
513 |
ttgtcttcacttattgtttcgcacatgatcaaagagatgaacattcatctcgtatgaaaaataagcttgattatttgatagagcgaaaaagtacttagta |
612 |
Q |
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| T |
10369436 |
ttgtcttcacctattgtttcgcacatgatcaaagagatgaacattcatctcgtatgaaaaataagcttgattatttgatagagcgaaaaagtccttagta |
10369535 |
T |
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| Q |
613 |
ttcatattaattgattgataaaggattgtaaat |
645 |
Q |
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| T |
10369536 |
ttcatattaattgattgataaaggattgtaaat |
10369568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 643 - 898
Target Start/End: Original strand, 10369629 - 10369887
Alignment:
| Q |
643 |
aataaactaactatctactaacaaacttaactaatttttccaactaacttttatatt---tcttaaagatgggacgtgtcacccttcataacaactaccg |
739 |
Q |
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| T |
10369629 |
aataaactaactatctactaacaaacttaactaatttttccaactaacttttatattatttcataaagatgggacatgtcacccttcataacaactaccg |
10369728 |
T |
|
| Q |
740 |
taaacctctaaccatatactcacctacccaccctcacgtgggtcttgcgtccaattctcacataatcagccttaacttggctctgataccatgttaaata |
839 |
Q |
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| T |
10369729 |
taaacctctaaccatatactcacctacccaccctcacgtgggtcttgcgtccaattctcacataatcagccttaacttggctctgataccatgttaaata |
10369828 |
T |
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| Q |
840 |
ggcttagatctcattatcaaaagttaactcaaaggatgaacatgcccaaccacatatat |
898 |
Q |
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| T |
10369829 |
ggcttagatctcattatcaaaagttaactcaaaggatgaacatgcccaaccacatatat |
10369887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 818 - 878
Target Start/End: Original strand, 23564535 - 23564594
Alignment:
| Q |
818 |
ggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaaggatga |
878 |
Q |
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| T |
23564535 |
ggctctgataccatgttaaataggtttggatctca-tcccaaaagttagctcaaaggatga |
23564594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 534 - 582
Target Start/End: Complemental strand, 43036975 - 43036927
Alignment:
| Q |
534 |
cacatgatcaaagagatgaacattcatctcgtatgaaaaataagcttga |
582 |
Q |
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| T |
43036975 |
cacacgatcaaagagatgaagattcatctcgtaggaaaaataagattga |
43036927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 818 - 875
Target Start/End: Original strand, 8401980 - 8402036
Alignment:
| Q |
818 |
ggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaagga |
875 |
Q |
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| T |
8401980 |
ggctctgataccatgttaaataagtttggatctcatt-ccaaaagttagctcaaagga |
8402036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 817 - 878
Target Start/End: Complemental strand, 50196990 - 50196930
Alignment:
| Q |
817 |
tggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaaggatga |
878 |
Q |
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| T |
50196990 |
tggctttgataccatgttaaataggtttggatctca-tcccaaaagttagctcaaaggatga |
50196930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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