View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12710_low_12 (Length: 351)
Name: NF12710_low_12
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 6833656 - 6833995
Alignment:
| Q |
1 |
catctaatcttgtagcttcatctccaacaaatttagctagacacaacacatgttcttgattattgcttaagaaattgcttggttggaattttgtaggatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6833656 |
catctaatcttgtagcttcatctccaacaaacttagctagacacaacacatgttcttgattattgcttaagaaattgcttggttggaattttgtaggatt |
6833755 |
T |
|
| Q |
101 |
atgaattggttttggctttaggaaggagaacgtcactctttatagaagatttgtctgaggctgaaaatttctccaaagaaggatatgaatctgttccacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6833756 |
atgaattggttttggctttaggaaggagaacgtcactctttatagaagatttgtctgaggctgaaaatttctccaaagaaggatatgaatctgttccacg |
6833855 |
T |
|
| Q |
201 |
tgcttatattgttgctaatgatgacttagcaattccagtggagtatcagtattggatgatccaaaatgctgggattgatatggtgaaagtggtcgacaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6833856 |
tgcttatattgttgctaatgatgacttagcaattccagtggagtatcagtattggatgatccaaaatgctgggattgatatggtgaaagtggtcgacaga |
6833955 |
T |
|
| Q |
301 |
gcagaccacatggctatgctttctaatcctcaagaccttt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6833956 |
gcagaccacatggctatgctttctaatcctcaagaccttt |
6833995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 164 - 341
Target Start/End: Original strand, 6843865 - 6844042
Alignment:
| Q |
164 |
aaaatttctccaaagaaggatatgaatctgttccacgtgcttatattgttgctaatgatgacttagcaattccagtggagtatcagtattggatgatcca |
263 |
Q |
| |
|
||||||| ||||| || ||||||| || ||||||||||||| ||||||||| ||||||||||| || ||||||||||||||| | | ||||||||||| |
|
|
| T |
6843865 |
aaaatttatccaaggagggatatgggtcggttccacgtgcttgtattgttgcaaatgatgacttggccattccagtggagtatgaacaatggatgatcca |
6843964 |
T |
|
| Q |
264 |
aaatgctgggattgatatggtgaaagtggtcgacagagcagaccacatggctatgctttctaatcctcaagacctttg |
341 |
Q |
| |
|
|||||||||||||||| |||| |||||| | | ||||||| || ||||||||||||||||| ||||||| ||||| |
|
|
| T |
6843965 |
aaatgctgggattgatgtggtcaaagtgattaatggagcagatcatatggctatgctttctaaaactcaagaactttg |
6844042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University