View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_14 (Length: 335)
Name: NF12710_low_14
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 1133075 - 1133388
Alignment:
| Q |
5 |
attatgtttgtttatattatgatgttatatcttttcctacttcatgttgtagccgaaggtttacgtgcaccattttctcatcttatcaaattttctttat |
104 |
Q |
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| T |
1133075 |
attatgtttgtttatattacgatgttatatcttttcctacttcatattgtagccgaaggtctacgtgcaccattttctcatcttatcaaattttctttat |
1133174 |
T |
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| Q |
105 |
ttatacacaagatttcatcacttatattgacattaactattttatgatttacattacagtaattcatgaatgtaatagagacagagattgtcacatctca |
204 |
Q |
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| T |
1133175 |
ttatacacaagatttcatcatttatattgacattaactattttatgatttacattacagtaattcacgaatgtaatagagacagagattgtcacatctca |
1133274 |
T |
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| Q |
205 |
tgtgtcccacctgaacttccgaagtgcattgcacatatgtgtttctgttttaacagttaagctgacaaataatgaaatacttttaaatttttaattttat |
304 |
Q |
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| T |
1133275 |
tgtgtcccacctgaacttccgaagtgcattgcacatatgtgtttctgttttaacagttaagctgacaaataatgaaatacttttaaatttttaattttat |
1133374 |
T |
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| Q |
305 |
ttcaacatgttgtt |
318 |
Q |
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| T |
1133375 |
ttcaacatgttgtt |
1133388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 1164812 - 1164864
Alignment:
| Q |
10 |
gtttgtttatattatgatgttatatcttttcctacttcatgttgtagccgaag |
62 |
Q |
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| T |
1164812 |
gtttgtttatactatgatcctatatcttttcctacttcatgttatagccgaag |
1164864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1137549 - 1137589
Alignment:
| Q |
30 |
tatatcttttcctacttcatgttgtagccgaaggtttacgt |
70 |
Q |
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| T |
1137549 |
tatatcttttcctacttcatgttgtagccaaagatttacgt |
1137589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1150942 - 1150982
Alignment:
| Q |
30 |
tatatcttttcctacttcatgttgtagccgaaggtttacgt |
70 |
Q |
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| T |
1150942 |
tatatcttttcctacttcgtgttgtagccaaagatttacgt |
1150982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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