View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_17 (Length: 317)
Name: NF12710_low_17
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 4444114 - 4444429
Alignment:
| Q |
1 |
tgctaattcttggaaggtacttttcataaaagagaaagcttggaagagccttaaattcagtgtttaagaactgaacaaaatagtttttcaagaaacaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4444114 |
tgctaattcttggaaggtacttttcataaaagggaaagcttggaagagctttaaattcagtgttcaagaactgaacaaaatagtttttcaagaaacaagt |
4444213 |
T |
|
| Q |
101 |
ttatgattatgtgaaccagtttcaaatttatttcattcttgattgggat----------------cgaactgaaatcaaatttgaaactggttttgaaaa |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4444214 |
ttatgattatgtgaaccagtttcaaatttatttcattcttgattgggttttaagaaatcggatttcgaactgaaatcaaatttgaaactggttttgaaaa |
4444313 |
T |
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| Q |
185 |
ctgttttcttaagttggttattcataccaactgtttctctaagagactagtttaataaactttaaaaactttttcttctcaaaattaaagaaagtggtcc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4444314 |
ctgttttcttaagttggttattcataccaactgtttctctaagagactagtttaataaactttaaagactttttcttctcaaaattaaagaaagtggtcc |
4444413 |
T |
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| Q |
285 |
tattgatggtatttgt |
300 |
Q |
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|||||||||||||||| |
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| T |
4444414 |
tattgatggtatttgt |
4444429 |
T |
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