View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_19 (Length: 241)
Name: NF12710_low_19
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28607299 - 28607522
Alignment:
| Q |
1 |
accattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatt |
100 |
Q |
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| T |
28607299 |
accattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatt |
28607398 |
T |
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| Q |
101 |
tttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcactgtgacaggttttccagttatagc |
200 |
Q |
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| T |
28607399 |
tttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcactgtgacaggttttccagtcgtagc |
28607498 |
T |
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| Q |
201 |
tcacaccctttctgagctcaaact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
28607499 |
tcacaccctttctgagctcaaact |
28607522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7590243 - 7590191
Alignment:
| Q |
1 |
accattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcat |
53 |
Q |
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| T |
7590243 |
accattttacatgttaaaaagaaagctgcaaccattgcgattttcggaatcat |
7590191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 7590136 - 7590060
Alignment:
| Q |
145 |
aatgcttgtgtaatatggactttagttctcactgtgacaggttttcc-agttatagctcacaccctttctgagctca |
220 |
Q |
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| T |
7590136 |
aatgcttatgtattactgactttagttctcgatgtgacaggttttccaatttatagcacacaccctttatgggctca |
7590060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 439604 - 439381
Alignment:
| Q |
1 |
accattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
439604 |
accattttacatgttaaaaagaaagctgcaactattgcaatttctgggataatttttccaatggtgatgggaccagctttataccttctacatcgaaaat |
439505 |
T |
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| Q |
101 |
tttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcactgtgacaggttttccagttatagc |
200 |
Q |
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| T |
439504 |
tttatggcaagggtgatggatctaatcttgaagaaagtacaataaatgtttatatattatggactttagttcttactgtgacaggttttccagttgtagt |
439405 |
T |
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| Q |
201 |
tcacaccctttctgagctcaaact |
224 |
Q |
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|||||||| |||||||| ||||| |
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| T |
439404 |
ccacaccctgtctgagcttaaact |
439381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 13658676 - 13658897
Alignment:
| Q |
3 |
cattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatttt |
102 |
Q |
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| T |
13658676 |
cattttacatgttaaaaagaaagctgcaaccattgcgatttccgggatcatctttccaatggtgatgggaccaccgttatacattctacatcgaaaattt |
13658775 |
T |
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| Q |
103 |
tatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcactgtgacaggttttccagttatagctc |
202 |
Q |
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| T |
13658776 |
tatggaaatggtgatggatctaaacttgaaagatgcacaatgaaagtttatatagaatggactttaattctcactgtgacaagtttttcaattgtagctc |
13658875 |
T |
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| Q |
203 |
acaccctttctgagctcaaact |
224 |
Q |
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|||| ||||||||||| ||||| |
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| T |
13658876 |
acacactttctgagctaaaact |
13658897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 13651187 - 13651408
Alignment:
| Q |
3 |
cattttacatgttaaaaagaaatctgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatttt |
102 |
Q |
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|||||||||||||||||||||| |||||| ||||| |||| || ||||| ||||| ||||| ||||| || ||||||| |||||||||| | ||| |
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| T |
13651187 |
cattttacatgttaaaaagaaagatgcaaccattgcgatttccgggatcatctttccgatggtaatggggccaattttatacaatctacatcgatacttt |
13651286 |
T |
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| Q |
103 |
tatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcactgtgacaggttttccagttatagctc |
202 |
Q |
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| T |
13651287 |
tatggcaatggtgatggacctaaactcgaagaaagtacaatgaatgtttatgtacaatggactttagttctcactatgacaagtttttcaattgtagctc |
13651386 |
T |
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| Q |
203 |
acaccctttctgagctcaaact |
224 |
Q |
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|||| ||||| ||||||||||| |
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| T |
13651387 |
acacactttccgagctcaaact |
13651408 |
T |
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