View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_2 (Length: 705)
Name: NF12710_low_2
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 304 - 690
Target Start/End: Complemental strand, 7249805 - 7249425
Alignment:
| Q |
304 |
atgcaaatataactgttaaaaactaaatcaacaggtgccttcaattgtatttatgaaaataactgtcctttttgtgtgttgcacagtaccaacagtagtt |
403 |
Q |
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| T |
7249805 |
atgcaaatataactgtcaaaaactaaatcaacaggtgccttcaagtgtatttatgaaaataactgtcttttttg-------cacagtaccaacagtagtt |
7249713 |
T |
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| Q |
404 |
aaggaacttcatttaaactttaccctattgaaaattcnnnnnnn-gtaactaaaaatttaaaaagtgtacaatataaaacagatgaaaggtttgctatat |
502 |
Q |
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| T |
7249712 |
aaggaacttcatttaaactttaccctattgaaaattcttttttttgtaactaaaaatttaaaaagtgtacaatataaaacagatgaaaggtttgctatat |
7249613 |
T |
|
| Q |
503 |
gttggatattttgccaaacagagcaacaacaattgtagatacacgtgaaagaggctgaactgacaaggctatcaacaaattcagatcttaaattgtagat |
602 |
Q |
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| T |
7249612 |
gttggatattttgccaaacagagcaacaacaattgtagatacacgtgaaagaggctgaactgacaaggctatcaacaaattcagatcttaaattgtagat |
7249513 |
T |
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| Q |
603 |
tcagcagaattccttcatcacgaacacacagactgtaatagctggtattatcaccatttcagaatttatatcgacaggaatgggtggt |
690 |
Q |
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| T |
7249512 |
tcagcagaattccttcatcacgaacacacagactgtaatagctggtatcatcaccatttcagaatttatatcgacaggaatgggtggt |
7249425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 7250065 - 7249806
Alignment:
| Q |
18 |
acccttaggtccacccgccttttcctgtcttaaatcctcctttttgaatatattaacatatatgtcacaattttctgaacaaagctagnnnnnnngtttc |
117 |
Q |
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| T |
7250065 |
acccttaggtccacccgccttttcctgtcttaaatcctcctttttgaatatattaacatatatgtcacaattttctgaacaaagctagaaaaaa-gtttc |
7249967 |
T |
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| Q |
118 |
cgacagtaaagcaaacaggtaggttgagtctgaagtagttgaaactagaaggtctattactgttacaatgaactgtctgcatggctgaagttacctagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7249966 |
cgacagtaaagcaaacaggtaggttgagtctgaagtagttgaaactagaaggtctattactgttacaatgaactgtctgcatggctgaagttacctagat |
7249867 |
T |
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| Q |
218 |
ctttcaatgccttcaccatgcgtattggaaagtataaaacttagacgcagttctgtactaa |
278 |
Q |
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| T |
7249866 |
ctttcaatgccttcaccatgcgtattggaaaggataaaacttagacgcagttctgtactaa |
7249806 |
T |
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