View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_23 (Length: 208)
Name: NF12710_low_23
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 31516998 - 31516825
Alignment:
| Q |
19 |
aaccagtgccttccattttcgtactctcattccacattgtgatccaattcatcggagaagcaattctcgaagctttttcgttcgatccaattccaaacga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516998 |
aaccagtgccttccattttcgtactctcattccacattgtgatccaattcatcggagaagcaattctcgaagctttttcgttcgatccaattccaaacga |
31516899 |
T |
|
| Q |
119 |
agctaagttatggaatcgatcctcgcaagagcattggaatacacgctcaaatactggctcaaatcattcaccag |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516898 |
agctaagttatggaatcgatcctcgcaagagcattggaatacacgctcaaatactggctcaaatcattcaccag |
31516825 |
T |
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