View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_3 (Length: 636)
Name: NF12710_low_3
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_3 |
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| [»] scaffold0375 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 22 - 621
Target Start/End: Original strand, 5981488 - 5982087
Alignment:
| Q |
22 |
actacaaaatcaaatttcgtcaagataggaggctaaaagtgcattatgattttttatagtctactttccaattgtcacgggaaagaaatcatgatactgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981488 |
actacaaaatcaaatttcgtcaagataggaggctaaaagtgcattatgattttttatagtctactttccaattgtcacgggaaagaaatcatgatactgt |
5981587 |
T |
|
| Q |
122 |
tgtttcacaatatatatgtaatcgaggcaagtccatcagtccatcacatttaagagaaacaattcatcttatgacgacatttttgcataacttgttttct |
221 |
Q |
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| T |
5981588 |
tgtttcacaatatatatgtaatcgaggcaagtccatcagtccatcacatttaagagaaacaattcatcttatgacgacatttttgcataacttgttttct |
5981687 |
T |
|
| Q |
222 |
cgaccgataatctaatgacaagaatcacatactttaagattaggcaagtggataattgcgaatttgaatccacgctttaacatatttgtttatttctctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5981688 |
cgaccgataatctaatgacaagaatcacatactttaagattaggcaagtggataattgcgaatttgaatccatgctttaacatatttgtttatttctctt |
5981787 |
T |
|
| Q |
322 |
ccttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgctt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981788 |
ccttgaatcattacgaatttggcatgagtcggtgaaagtattgttaccttttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgctt |
5981887 |
T |
|
| Q |
422 |
gtacttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagagagaacttaggtttgcagtttaggattttgtacgg |
521 |
Q |
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| T |
5981888 |
gtacttgtcaacatgaacatatctcctctggttttgggtgctagccaagccaccagaggttcagagagaacttaggtttgcagtttaggattttgtacgg |
5981987 |
T |
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| Q |
522 |
tggtaactaaattctgtacaagtgagttctatttatagacttaattctgcgcaagtgagttctatttatagactcacatgtgtgtaccatatagcctatg |
621 |
Q |
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| T |
5981988 |
tggtaactaaattctgtacaagtgagttctatttatagacttaattctgcgcaagtgagttctatttatagactcacatgtgtgtaccatatagcctatg |
5982087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 577 - 621
Target Start/End: Original strand, 5982143 - 5982187
Alignment:
| Q |
577 |
tgagttctatttatagactcacatgtgtgtaccatatagcctatg |
621 |
Q |
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| T |
5982143 |
tgagttctatttatagactcacatgtgtgtaccatatagcctatg |
5982187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 320 - 489
Target Start/End: Complemental strand, 19820222 - 19820053
Alignment:
| Q |
320 |
ttccttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgc |
419 |
Q |
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||||||||||||||| ||||||| || || || || ||||| ||||||||||||||| |||| ||| ||||| |||||||||||||| |||||||||| |
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| T |
19820222 |
ttccttgaatcattatgaatttgacacgaatcagtaaaagtgttgttacctcttgaagtgcatgaacgatttcgttcacaacaaagcaaggtagcaatgc |
19820123 |
T |
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| Q |
420 |
ttgtacttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagagag |
489 |
Q |
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| T |
19820122 |
ctctactcgtccagacgaacaaatctcctttgattctcggtgctaaccaagcgatcagaggttcagagag |
19820053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 31651048 - 31651153
Alignment:
| Q |
388 |
atttcaatcacaacaaagcaacgtagcaatgcttgtacttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagag |
487 |
Q |
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|||||||||||| |||| |||| || |||||| | |||| ||| ||| ||||| ||||||||||||| | |||| ||||||| | ||||||||||||| |
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| T |
31651048 |
atttcaatcacagcaaaacaacataacaatgcctctactcgtccacacgaacagatctcctctggttcccgatgctcgccaagcaatcagaggttcagag |
31651147 |
T |
|
| Q |
488 |
agaact |
493 |
Q |
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|||||| |
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| T |
31651148 |
agaact |
31651153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 408
Target Start/End: Original strand, 37031482 - 37031570
Alignment:
| Q |
320 |
ttccttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgca-aaaacaatttcaatcacaacaaagcaa |
408 |
Q |
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||||||| |||||||||||||| ||||| || |||| || |||||||||||||||| |||| |||| |||||| |||||| |||||||| |
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| T |
37031482 |
ttccttggatcattacgaatttaacatga-tcagtgatagaattgttacctcttgaagtgcagaaaagaatttcgatcacatcaaagcaa |
37031570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 562
Target Start/End: Original strand, 41315174 - 41315260
Alignment:
| Q |
476 |
agaggttcagagagaacttaggtttgcagtttaggattttgtacggtggtaactaaattctgtacaagtgagttctatttatagact |
562 |
Q |
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|||| ||||||||||||| | |||||| |||| | ||||||| ||||||||| ||||||| | || ||| ||||||||||||||| |
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| T |
41315174 |
agagcttcagagagaactacgatttgcaatttaaggttttgtaaagtggtaactgaattctgcaaaaatgaattctatttatagact |
41315260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0375 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0375
Description:
Target: scaffold0375; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 16250 - 16189
Alignment:
| Q |
353 |
gtgaaagtatt-gttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtag |
413 |
Q |
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| T |
16250 |
gtgaaagtatttgttacctcttgaagtacataaacaatttcgatcataaaaaagcaacgtag |
16189 |
T |
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