View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_5 (Length: 523)
Name: NF12710_low_5
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 6 - 512
Target Start/End: Original strand, 11224626 - 11225132
Alignment:
| Q |
6 |
agtgagatgaataccgaaaatcgtaagaagcttaaagtcccacatgttggtggtagtaggagcaacgcaagaaggggtcgtctaatggtaagcagattca |
105 |
Q |
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| T |
11224626 |
agtgagaagaataccgaaaatcgtaagaagcttaaagtcccacatgctggtggtagtaggagcaacgcaagaaggggtcgtctaatggtaagcagattca |
11224725 |
T |
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| Q |
106 |
aaatatttatgtatcccaacaaagctgttattgatgagttcttaatttacattttatttatgatgttaggaacaacaattaggaaggcctgtatgtcgaa |
205 |
Q |
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| T |
11224726 |
aaatatttatgtatcccaacaaagctgttattgatgagttcttaatttacattttatttatgatgttaggaacaacaattaggaaggcctgtatgtcgaa |
11224825 |
T |
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| Q |
206 |
gcgaggttattttgtcaactttaataaagaatgatggaaattatgtgaacgaagaaggaaaagctatagctttaagtatatttttgggtgtgttaagttg |
305 |
Q |
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| T |
11224826 |
gcgaggttattttgtcaactttaataaagaatgatggaaattatgtgaacgaagaaggaaaagcaatagttgtaagtatacttttgggtgtgttaagttg |
11224925 |
T |
|
| Q |
306 |
attaaatgttgtgcatgtagtatacgagttacacattgttgaaatattctgtgaactgattacaaaatcaaaattctgcaaattgattgtttaatgttta |
405 |
Q |
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| T |
11224926 |
attaaatgttgtgcatgtagtataagagttacacattgttgaaatattctgcgaactgattacaaaatcaaaattctg-aaattgattgtttaatgttta |
11225024 |
T |
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| Q |
406 |
tctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatactttaaggcgtg-tgggtgattatatggt |
504 |
Q |
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| T |
11225025 |
cctgattgtaagctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttggttgattatatgtt |
11225124 |
T |
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| Q |
505 |
gttcatgt |
512 |
Q |
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| T |
11225125 |
gttcatgt |
11225132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 271 - 480
Target Start/End: Original strand, 11225243 - 11225452
Alignment:
| Q |
271 |
atagctttaagtatatttttgggtgtgttaagttgattaaatgttgtgcatgtagtatacgagttacacattgttga-aatattctgtgaactgattaca |
369 |
Q |
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| T |
11225243 |
atagctgtaaatatacttttgggtgtgttga-ttgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgta |
11225341 |
T |
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| Q |
370 |
aaatcaaaattctgcaaattgattgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgt |
469 |
Q |
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| T |
11225342 |
aaatcaaaattttgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgt |
11225441 |
T |
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| Q |
470 |
aagtatacttt |
480 |
Q |
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| T |
11225442 |
aagtatacttt |
11225452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 270 - 429
Target Start/End: Original strand, 11225433 - 11225592
Alignment:
| Q |
270 |
tatagctttaagtatatttttgggtgtgttaagttgattaaatgttgtgcatgtagtatacgagttacacattgttga-aatattctgtgaactgattac |
368 |
Q |
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| T |
11225433 |
tatagctgtaagtatacttttgggtgtgttg-gttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgt |
11225531 |
T |
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| Q |
369 |
aaaatcaaaattctgcaaattgattgtttaatgtttatctgattgtaagttgattgtttaa |
429 |
Q |
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| T |
11225532 |
aaaatcaaaattatgcgaactgattgtttgatgtatttctgattgtaagttgattgtttaa |
11225592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 11225174 - 11225261
Alignment:
| Q |
393 |
tgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatacttt |
480 |
Q |
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| T |
11225174 |
tgtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatatacttt |
11225261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 11225111 - 11225171
Alignment:
| Q |
302 |
gttgattaaatgttgtgcatgtagtatacgagttacacattgttgaaatattctgtgaact |
362 |
Q |
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| T |
11225111 |
gttgattatatgttgttcatgtagtataagagttacacattgttgataaattctgcgaact |
11225171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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