View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_7 (Length: 447)
Name: NF12710_low_7
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5510990 - 5511320
Alignment:
| Q |
1 |
gagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatttaggagtatttagaatattttgacca |
100 |
Q |
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| T |
5510990 |
gagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatt-aggagtatttagaatattttgacca |
5511088 |
T |
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| Q |
101 |
tattgtgtttttcatatagaataacattacttggtatgcaattaatttaaggggtttattctgtaacctttattaacaagatacttgggaatgatatttg |
200 |
Q |
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| T |
5511089 |
tattgtgtttttcatatagaataacattacttggtaagcaattaatttaaggggttgattctgtaacctttattaacaagatacttgggaataatatttg |
5511188 |
T |
|
| Q |
201 |
tgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaacaagtgct |
300 |
Q |
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| T |
5511189 |
tgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaacaagtgct |
5511288 |
T |
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| Q |
301 |
ttattgtttcatgcattatcctgttttatttc |
332 |
Q |
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| T |
5511289 |
ttattgtttcatgcattatcctgttttctttc |
5511320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 327 - 430
Target Start/End: Original strand, 5511355 - 5511458
Alignment:
| Q |
327 |
tatttctcgaatccatatcatatttgacatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcgttgttgatgt |
426 |
Q |
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| T |
5511355 |
tatttctcgaatccatatcatatttgatatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattattgttgttgatgt |
5511454 |
T |
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| Q |
427 |
gtgt |
430 |
Q |
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|||| |
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| T |
5511455 |
gtgt |
5511458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 5510846 - 5510915
Alignment:
| Q |
92 |
ttttgaccatattgtgtttttcatatagaataacatta-cttggtatgcaattaatttaaggggtttattc |
161 |
Q |
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| T |
5510846 |
tttttaccatattatgtttttcatttagaataacattagcttgtcatgcaa-taatttaaggggtttattc |
5510915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 31026754 - 31026700
Alignment:
| Q |
362 |
cgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcg |
416 |
Q |
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| T |
31026754 |
cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcg |
31026700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 18571031 - 18570970
Alignment:
| Q |
362 |
cgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcgttgttga |
423 |
Q |
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||||||||||| | ||||| |||||| |||||||||| || | |||||||||||| |||||| |
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| T |
18571031 |
cgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttga |
18570970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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