View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12710_low_8 (Length: 439)
Name: NF12710_low_8
Description: NF12710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12710_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 40454892 - 40454614
Alignment:
| Q |
40 |
tactatcaacaactatgcccgcacgatataatcaacaccatattattattattatagtatagaaagagagataataattgagattttccaaacacttcta |
139 |
Q |
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| T |
40454892 |
tactatcaacaactatgcccgcacgatataatcaacaccatattattattat---agtatagaaagagagataataattgagattttccaaacacttcta |
40454796 |
T |
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| Q |
140 |
gattgggattttaactttaaaatggtgagaaatgacattgctcttgaataaaaatagctgcctttaattttgtcacatcatttatacaatgtaaattttc |
239 |
Q |
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| T |
40454795 |
gattgggatttaaactttaaaatggtgagaaatgacattgctttcgaataaaaatagctgcctttaattttgtcacatcatttatacaatgtaaattttc |
40454696 |
T |
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| Q |
240 |
tcttgggagaaattaggccaatccttattcaaagataaagtttctaccaattaaaactataaaatctcatcaaaagctacac |
321 |
Q |
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| T |
40454695 |
tcttgggagaaattaggccaatccttattcaaagataaagtttctaccaattaaaactataaaatctcatcaaaagctacac |
40454614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 40454584 - 40454485
Alignment:
| Q |
326 |
tcaaagcatacaaaatcatcaacagtctgtctattagatcgtatttgttttctttgcttcagcagcagcagattctggccaaatttgtgcagtcttcacc |
425 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40454584 |
tcaaagcatacaaaatcatcaacagtct----attatatcgtatttgttttctttgcttcagcagtagcagattctggccaaatttgtgcagtcttcacc |
40454489 |
T |
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