View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12711_high_1 (Length: 371)
Name: NF12711_high_1
Description: NF12711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12711_high_1 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 12468601 - 12468949
Alignment:
| Q |
15 |
atggacatcactcgaaaccgcactagaataatgaccccctgatggcaatctaggccatcctgtttggatccattatcatctcctcataatttgcttacag |
114 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
12468601 |
atggacctcactcgaaaccgcactggaataatgaccccctggtggcaatctagaccatcatgtttggatccatcatcatctcctcataatttgcttacag |
12468700 |
T |
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| Q |
115 |
tggtcccatgaggacagttttccaggtaaaggttcaagaaccgaaaccttaaacctacacaataagactaactcaagggcattggctcaggtatgcttac |
214 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12468701 |
aggtcccatgaggacaattttccaggtaaaggttcaaggaccaaaaccctaaacctacacaataagactaactcaagggcattggctcaagtatgcttac |
12468800 |
T |
|
| Q |
215 |
tctcacccaaaataccttatcacccatgtcgtttactaacttgatcgttggattgtgttcatgtacaccatccccatattttccctgagaagaaggttgg |
314 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
12468801 |
tctcacccgaaataagttatcacccacgtcgtttactaacttgatcgttggattgtgtgcaggtacaccatccccatatttgccctgagaagaaggttgg |
12468900 |
T |
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| Q |
315 |
tgttgttgcatcttcaaata-ccttacttttagcatctcttttctctgc |
362 |
Q |
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| T |
12468901 |
tgttgttggatcttcaaatacccttacttttagcgtctcttttctctgc |
12468949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 12465962 - 12466309
Alignment:
| Q |
15 |
atggacatcactcgaaaccgcactagaataatgaccccctgatggcaatctaggccatcctgtttggatccattatcatctcctcataatttgcttacag |
114 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12465962 |
atggacctcactcaaaaccgcactggaataatgaccccctgatgtcaatctagaccatcctgtttggatccattatcatctcctcataatttgcttacag |
12466061 |
T |
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| Q |
115 |
tggtcccatgaggacagttttccaggtaaaggttcaagaaccgaaaccttaaacctacacaataagactaactcaagggcattggctcaggtatgcttac |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
12466062 |
tggtcccatgaggacagttttcctggtaaaggttcaaggaccgaaaccctaaacctacacattatgactaactcaagggcattggctcaggtatgcttac |
12466161 |
T |
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| Q |
215 |
tctcacccaaaataccttatcacccatgtcgtttactaacttgatcgttggattgtgttcatgtacaccatccccatattttccctgagaagaaggttgg |
314 |
Q |
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|||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| || || ||||| |
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| T |
12466162 |
tctcactcgaaatacgttatcacccaagtcgtttactaacttgatcgttggattgtgtgcaggtacaccatccccatatttgccctga-aaaaatgttgg |
12466260 |
T |
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| Q |
315 |
tgttgttgcatcttcaaata-ccttacttttagcatctcttttctctgc |
362 |
Q |
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||||| || ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
12466261 |
tgttgatggatcttcaaatacccttacttttagcgtctcttttctctgc |
12466309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 12484725 - 12485067
Alignment:
| Q |
15 |
atggacatcactcgaaaccgcactagaataatgaccccctgatggcaatctaggccatcctgtttggatccattatcatctcctcataatttgcttacag |
114 |
Q |
| |
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|||||| |||||||||||| ||| |||||||||| |||| | || ||||||| |||||||||| ||||||| || |||||||||||||||||||| | |
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| T |
12484725 |
atggacctcactcgaaaccttactggaataatgactccctaaaggtaatctagaccatcctgttcagatccatcattatctcctcataatttgcttataa |
12484824 |
T |
|
| Q |
115 |
tggtcccatgaggacagttttccaggtaaaggttcaagaaccgaaaccttaaacctacacaataagactaactcaagggcattggctcaggtatgcttac |
214 |
Q |
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||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12484825 |
tggtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaagggcattggctcatgtatgcttac |
12484924 |
T |
|
| Q |
215 |
tctcacccaaaataccttatcacccatgtcgtttactaacttgatcgttggattgtgttcatgtacaccatccccatattttccctgagaagaaggttgg |
314 |
Q |
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|||||||| ||||| ||||||| ||| || ||||||| |||||| ||||||| | ||| || |||||| |||||||| ||| | |||||||||||||||| |
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| T |
12484925 |
tctcacccgaaatagcttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacgatccccatttttgctctgagaagaaggttgg |
12485024 |
T |
|
| Q |
315 |
tgttgttgcatcttcaaatac-cttacttttagcatctctttt |
356 |
Q |
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| T |
12485025 |
tgttgttggatcttcaagtacgcttacttttagcgtctctttt |
12485067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 35752 - 35410
Alignment:
| Q |
15 |
atggacatcactcgaaaccgcactagaataatgaccccctgatggcaatctaggccatcctgtttggatccattatcatctcctcataatttgcttacag |
114 |
Q |
| |
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|||||| |||||||||||| ||| |||||||||| |||| | || ||||||| |||||||||| ||||||| || |||||||||||||||||||| | |
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| T |
35752 |
atggacctcactcgaaaccttactggaataatgactccctaaaggtaatctagaccatcctgttcagatccatcattatctcctcataatttgcttataa |
35653 |
T |
|
| Q |
115 |
tggtcccatgaggacagttttccaggtaaaggttcaagaaccgaaaccttaaacctacacaataagactaactcaagggcattggctcaggtatgcttac |
214 |
Q |
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||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35652 |
tggtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaagggcattggctcatgtatgcttac |
35553 |
T |
|
| Q |
215 |
tctcacccaaaataccttatcacccatgtcgtttactaacttgatcgttggattgtgttcatgtacaccatccccatattttccctgagaagaaggttgg |
314 |
Q |
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|||||||| ||||| ||||||| ||| || ||||||| |||||| ||||||| | ||| || |||||| |||||||| ||| | |||||||||||||||| |
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| T |
35552 |
tctcacccgaaatagcttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacgatccccatttttgctctgagaagaaggttgg |
35453 |
T |
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| Q |
315 |
tgttgttgcatcttcaaatac-cttacttttagcatctctttt |
356 |
Q |
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|||||||| |||||||| ||| |||||||||||| |||||||| |
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| T |
35452 |
tgttgttggatcttcaagtacgcttacttttagcgtctctttt |
35410 |
T |
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