View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12711_low_2 (Length: 370)
Name: NF12711_low_2
Description: NF12711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12711_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 153 - 355
Target Start/End: Original strand, 15235585 - 15235787
Alignment:
| Q |
153 |
ttcttgtgctattgtatgtgtaatcggtggttgcctatctaactatcacctgtagtgtttctgcacgtgcatctggttgtggaatgagtgtcggaatttc |
252 |
Q |
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| T |
15235585 |
ttcttgtgctattgtatgcgtaatcggtggttgcctatctaaatgtcacctatagtgtttctgcacgtgcatctggttgtggaatgagtgtcggaatttt |
15235684 |
T |
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| Q |
253 |
gaatgccttaggggatccaataccctcctaactgtcctttggtttccacccttgcttaggtctctatgagttaaccggttttttccctttgtcagactga |
352 |
Q |
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| T |
15235685 |
gaatgccttaggggatccaataccctcatgactgtcctttggtttccacccatgcttaggtctctgtgagttaactggttttttccctttgtcagtctga |
15235784 |
T |
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| Q |
353 |
tgt |
355 |
Q |
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||| |
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| T |
15235785 |
tgt |
15235787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 15235413 - 15235557
Alignment:
| Q |
11 |
cagagaccagagtgagaatgggctgaacctcattaacaataatttgtggtcgaactatttcatcagtcacgttttgtaacgacatactaaaactggtgct |
110 |
Q |
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| T |
15235413 |
cagagaccagagtgagaatgggctgaacctcattaacaataatttgtggtcaaactatttcatcagtcacattttgtaacgacatactaaaagtggtgct |
15235512 |
T |
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| Q |
111 |
agacctgacagaggacgtcgcacctggctgcctatctaaatgttc |
155 |
Q |
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| T |
15235513 |
agacctgacagaggacgtcgcacctggctgcctatctaaatgttc |
15235557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 23794837 - 23794693
Alignment:
| Q |
11 |
cagagaccagagtgagaatgggctgaacctcattaacaataatttgtggtcgaactatttcatcagtcacgttttgtaacgacatactaaaactggtgct |
110 |
Q |
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| T |
23794837 |
cagagaccagagtgagaaggggctgaacctcattaacaataatctgtggtcgaactatttcatcagtcacgttttgcaacgacatactaaaagtggcgct |
23794738 |
T |
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| Q |
111 |
agacctgacagaggacgtcgcacctggctgcctatctaaatgttc |
155 |
Q |
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| T |
23794737 |
agacctgataggggacgtcacacctggctgcctatctaaatgttc |
23794693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 199 - 354
Target Start/End: Complemental strand, 23794524 - 23794369
Alignment:
| Q |
199 |
cacctgtagtgtttctgcacgtgcatctggttgtggaatgagtgtcggaatttcgaatgccttaggggatccaataccctcctaactgtcctttggtttc |
298 |
Q |
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| T |
23794524 |
cacctgtagtgtttctgcacgtgcatatgattgtggaatgagtgccggaatttcaaatgccttggaggagccaataccctccggattgtcctatggtttc |
23794425 |
T |
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| Q |
299 |
cacccttgcttaggtctctatgagttaaccggttttttccctttgtcagactgatg |
354 |
Q |
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| T |
23794424 |
cacccttgcttaggtctctgtaagttaaccggttttttccctttgtcagtctgatg |
23794369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 28015457 - 28015313
Alignment:
| Q |
11 |
cagagaccagagtgagaatgggctgaacctcattaacaataatttgtggtcgaactatttcatcagtcacgttttgtaacgacatactaaaactggtgct |
110 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |
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| T |
28015457 |
cagagaccagagtgagaaggggctggacctcattaacaatattttgtggtcgaactatttcatcagtcacgttctgtaacgacatactaaaagtggcgct |
28015358 |
T |
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| Q |
111 |
agacctgacagaggacgtcgcacctggctgcctatctaaatgttc |
155 |
Q |
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| T |
28015357 |
agacctgacaggggacgtcacacctagctgcctatctaagtgttc |
28015313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 28015140 - 28015005
Alignment:
| Q |
203 |
tgtagtgtttctgcacgtgcatctggttgtggaatgagtgtcggaatttcgaatgccttaggggatccaataccctcctaactgtcctttggtttccacc |
302 |
Q |
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||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||| | ||| |||||||||||| | | |||||||||||||||| |
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| T |
28015140 |
tgtagtgtttctgcatgtgcatctagttgtggaatgagtgctggaatttcaaatgccttggaggagccaataccctccggattctcctttggtttccacc |
28015041 |
T |
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| Q |
303 |
cttgcttaggtctctatgagttaaccggttttttcc |
338 |
Q |
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| T |
28015040 |
cttgcttaggtctctgtgagttaactggttttttcc |
28015005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 30460860 - 30460899
Alignment:
| Q |
12 |
agagaccagagtgagaatgggctgaacctcattaacaata |
51 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
30460860 |
agagaccagagtgagaaggggctgaacctcattaacaata |
30460899 |
T |
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