View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12711_low_5 (Length: 244)

Name: NF12711_low_5
Description: NF12711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12711_low_5
NF12711_low_5
[»] chr2 (11 HSPs)
chr2 (6-228)||(7542076-7542298)
chr2 (17-217)||(12234550-12234750)
chr2 (6-228)||(14703258-14703480)
chr2 (8-222)||(11999263-11999477)
chr2 (6-222)||(12245502-12245718)
chr2 (8-219)||(12258679-12258890)
chr2 (41-228)||(16657648-16657835)
chr2 (130-228)||(43625262-43625360)
chr2 (34-118)||(16662116-16662200)
chr2 (9-99)||(17716786-17716876)
chr2 (9-99)||(17718050-17718140)
[»] chr4 (3 HSPs)
chr4 (6-208)||(35132327-35132520)
chr4 (59-201)||(9336040-9336182)
chr4 (135-228)||(30775102-30775195)
[»] chr7 (19 HSPs)
chr7 (6-228)||(8659213-8659435)
chr7 (38-228)||(1301310-1301500)
chr7 (41-210)||(10494505-10494674)
chr7 (6-213)||(8654315-8654522)
chr7 (34-228)||(6789362-6789556)
chr7 (38-154)||(8667343-8667459)
chr7 (6-117)||(17260202-17260313)
chr7 (36-114)||(8576290-8576368)
chr7 (34-219)||(3147123-3147308)
chr7 (24-213)||(8545498-8545687)
chr7 (50-210)||(13333596-13333756)
chr7 (34-114)||(8570275-8570355)
chr7 (34-102)||(29577796-29577864)
chr7 (42-102)||(29581973-29582033)
chr7 (40-219)||(27831005-27831184)
chr7 (35-116)||(8537998-8538079)
chr7 (52-220)||(17267797-17267965)
chr7 (34-216)||(8646739-8646921)
chr7 (38-114)||(8581664-8581740)
[»] chr1 (3 HSPs)
chr1 (101-228)||(52549212-52549330)
chr1 (41-228)||(4678689-4678875)
chr1 (34-105)||(15595007-15595078)
[»] chr5 (1 HSPs)
chr5 (34-228)||(28219768-28219962)
[»] chr8 (1 HSPs)
chr8 (34-228)||(43744666-43744860)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 7542298 - 7542076
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7542298 actactttgtacaagagttcaagagaaagaacaaagtggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaag 7542199  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7542198 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 7542099  T
Q  206 aatatggatctttttaacgagtg 228  Q
    |||||||||||||||||||||||    
T  7542098 aatatggatctttttaacgagtg 7542076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 12234750 - 12234550
Alignment:
Q  17 caagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctt 116  Q
    |||||| |||| |||| ||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||    
T  12234750 caagagttcaatagaaagaaaaaagtggacatgagtggaaatccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctt 12234651  T
Q  117 tccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatct 216  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12234650 tccttgttgttgcaaccattgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggatct 12234551  T
Q  217 t 217  Q
    |    
T  12234550 t 12234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 14703480 - 14703258
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    |||||||||| |||||| |||||||||  |||| | ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  14703480 actactttgttcaagagttcaagagaaaaaacagattggacattagtggaaatccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaag 14703381  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
    | ||||||||||||  ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||    
T  14703380 aacactttctttccaagttgtcgccactattgaggtagatgctttatttcaatgcattgacttttcttcatcgatcaatagggccaagtttgaagaaatg 14703281  T
Q  206 aatatggatctttttaacgagtg 228  Q
    ||||||||  ||||||| |||||    
T  14703280 aatatggacttttttaatgagtg 14703258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 11999477 - 11999263
Alignment:
Q  8 tactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagat 107  Q
    ||||||||||||||| |||||| || |||| ||||||| |||||||| | | |||||||||| ||||||||||||||||||||||||||||||||||||     
T  11999477 tactttgtacaagagttcaagataaagaacgaagtggatattagtggaagttcaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaa 11999378  T
Q  108 cactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaa 207  Q
     ||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||  ||||    
T  11999377 tactatcatttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattgaa 11999278  T
Q  208 tatggatctttttaa 222  Q
    | | |||||| ||||    
T  11999277 tttagatcttcttaa 11999263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 12245502 - 12245718
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    ||||||||| ||| ||| ||||||||| ||||||| |||| |||||||  | | |||||||||| ||||| |||||||||||||||||||||||||||||    
T  12245502 actactttgcacaggagttcaagagaaagaacaaattggatattagtgcaagttcaaaagccttgaggagattgagaactgcttgtgagagggcaaaaag 12245601  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
    |  |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||  ||    
T  12245602 aatactttcgtttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattg 12245701  T
Q  206 aatatggatctttttaa 222  Q
    ||| | |||||| ||||    
T  12245702 aatttagatcttcttaa 12245718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 12258679 - 12258890
Alignment:
Q  8 tactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagat 107  Q
    ||||||||| ||||| ||||||||| ||||||||| || || ||||| ||||||| ||| || ||||| |||| ||| ||||||||||| ||||||||||    
T  12258679 tactttgtagaagagttcaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacagcttgtgagagtgcaaaaagat 12258778  T
Q  108 cactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaa 207  Q
    |||||||||  ||||||||||| ||||||||| |||||||||||| | | |||||||| |||||| |||| |||||| | |||||||||||||| || ||    
T  12258779 cactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaa 12258878  T
Q  208 tatggatctttt 219  Q
    | |||| |||||    
T  12258879 tttggaactttt 12258890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 16657648 - 16657835
Alignment:
Q  41 gtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgagg 140  Q
    |||||||| ||||||||  ||| |||||| ||||||||||||||||| |||||||||||||| ||  |||| |||||   | ||||  ||||| ||||||    
T  16657648 gtggacataagtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgagg 16657747  T
Q  141 tagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    |||||||||||||||| || ||||||||||||||||| ||||   | |||||||||||||| || |||||||||||||| || |||||    
T  16657748 tagattctttatttcagggaattgacttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtg 16657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 43625360 - 43625262
Alignment:
Q  130 cactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    |||||||||||||||||||||||| |  || |||||||| | |||||| |||| | | ||||| ||||| || || |||||||||||||| ||||||||    
T  43625360 cactattgaggtagattctttattccgtggtattgacttcttttcatcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtg 43625262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 16662116 - 16662200
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttc 118  Q
    |||||||||||| || | | ||||||||| |||||| ||||||||||||||| ||||||| | ||| |||||  |||| ||||||    
T  16662116 gaacaaagtggatatcactaggaatccaagagccttgaggaggttgagaacttcttgtgaaaaggcgaaaaggacactctctttc 16662200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 17716786 - 17716876
Alignment:
Q  9 actttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggc 99  Q
    ||||||| | |||| ||||||||| ||||||   |||||||||||| || |||| |||  | | ||||||||| |||||||||||||||||    
T  17716786 actttgttcgagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaggttgaggactgcttgtgagagggc 17716876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 17718050 - 17718140
Alignment:
Q  9 actttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggc 99  Q
    ||||||| |||||| ||||||||| ||||||   |||||||||||| || |||| |||  | | || |||||| |||||||||||||||||    
T  17718050 actttgttcaagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaagttgaggactgcttgtgagagggc 17718140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 35132520 - 35132327
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||         ||||||||| ||  |||||||||| ||    
T  35132520 actactttgtacaagagttcaagagaaagaacaaagtagacattagtgggaattcaaaagcctt---------gagaactgcctgctagagggcaaagag 35132430  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||| |||    
T  35132429 atcactttctttccttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcatcaatcaatcgcgccaagtttgaggaaatg 35132330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 9336040 - 9336182
Alignment:
Q  59 ccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctttatttcaag 158  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||| ||||| ||||||||||| ||||||||   |    
T  9336040 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgg 9336139  T
Q  159 gcattgacttttcttcatcgatcaatagggccaagtttgagga 201  Q
    | || |||||||||||||| |||| | | ||||| ||||||||    
T  9336140 gaatcgacttttcttcatcaatcactcgtgccaaatttgagga 9336182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 30775195 - 30775102
Alignment:
Q  135 ttgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    ||||| |||||  ||||||||||| |||||||||||||||||| |||| | | | |||||||||||| || |||||||| |||||||| |||||    
T  30775195 ttgagatagataatttatttcaagacattgacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtg 30775102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 8659435 - 8659213
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    ||||||||||| | ||| |||| |  | ||| ||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||| ||    
T  8659435 actactttgtagaggagttcaaaaagaagaataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagag 8659336  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
      |||| |||||   | ||||  ||||| ||||||| |||||||||||||| || || ||||| | |||||  |||| | | |||| ||||||||| |||    
T  8659335 gacactctcttttgcttttgtcaccactgttgaggtcgattctttatttcagggaatagacttctgttcattaatcactcgtgccaggtttgaggaaatg 8659236  T
Q  206 aatatggatctttttaacgagtg 228  Q
    ||||||||||||||||| |||||    
T  8659235 aatatggatctttttaatgagtg 8659213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 1301500 - 1301310
Alignment:
Q  38 aaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattg 137  Q
    ||||||||||||||||| || |  ||| |||||||||||||||||| ||| |||||||||||||||||  |||| |||||   | | ||  ||||  |||    
T  1301500 aaagtggacattagtggtaaccagaaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccgttg 1301401  T
Q  138 aggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    |||| |||||||||||||| || || ||||| | |||||  |||| | | |||||||||||||| || ||||||||||||||||| |||||    
T  1301400 aggtcgattctttatttcagggaatcgacttctgttcattaatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtg 1301310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 10494505 - 10494674
Alignment:
Q  41 gtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgagg 140  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||  ||||  ||||||    
T  10494505 gtggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgagg 10494604  T
Q  141 tagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatat 210  Q
    | ||| ||||||||   || || |||||||||||||| |||| | | ||||| |||||||| || |||||    
T  10494605 tcgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 10494674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 8654522 - 8654315
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    ||||||||||| | ||| |||| |  | ||| |||||||| ||||| || || |||||| |||||||||||||||||||||| |||||||||||||||||    
T  8654522 actactttgtagaggagttcaaaaagaagaataaagtggaaattagcggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaag 8654423  T
Q  106 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 205  Q
       ||| |||||   | ||||  ||||| ||||||||||| ||||||||   || || |||||||||||||| |||| | | || || |||||||| ||     
T  8654422 gatactctcttttacttttgtcaccactgttgaggtagatgctttatttatgggaatcgacttttcttcatcaatcactcgtgctaaatttgaggaaatt 8654323  T
Q  206 aatatgga 213  Q
    ||||||||    
T  8654322 aatatgga 8654315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 6789556 - 6789362
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccact 133  Q
    |||||||||||| |||| ||| ||  |||  |||||||| |||||||||||||| ||||| ||||| |||||   ||| |||||  |||| ||  | |||    
T  6789556 gaacaaagtggatattactggaaactcaagggccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactact 6789457  T
Q  134 attgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    ||||||||||| ||||||||||| ||||| |||||   ||||||  | | | |||||||||||||||| || ||||||||| ||||||| |||||    
T  6789456 attgaggtagactctttatttcagggcatcgacttcatttcatcacttactcgggccaagtttgaggaaatcaatatggatatttttaatgagtg 6789362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 8667459 - 8667343
Alignment:
Q  38 aaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattg 137  Q
    ||||||||||| |||  ||| |||||| |||||||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||| ||||| |||    
T  8667459 aaagtggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttg 8667360  T
Q  138 aggtagattctttattt 154  Q
    |||||||| ||||||||    
T  8667359 aggtagatgctttattt 8667343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 17260313 - 17260202
Alignment:
Q  6 actactttgtacaagagctcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    |||| |||||| | ||| |||| |||| ||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |  ||||||||    
T  17260313 actattttgtagaggagatcaaaagaacgaaaaaattggacattattgggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaag 17260214  T
Q  106 atcactttcttt 117  Q
      ||||||||||    
T  17260213 gacactttcttt 17260202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 8576368 - 8576290
Alignment:
Q  36 acaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttc 114  Q
    |||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||  |||||||    
T  8576368 acaaagaggatattagtgagaattcaaaagccttaaggaggttgagaactgcttgtgaaaaggcaaaaaggacactttc 8576290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 3147308 - 3147123
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccact 133  Q
    |||||| || |||||||||| |||  ||| ||||||||||||||||| ||| || ||||| || |||||| ||  ||| |||||   |||  |  ||||     
T  3147308 gaacaaggtagacattagtgagaactcaagagccttaaggaggttgaaaacggcgtgtgaaagagcaaaacgaatactatcttttgctgtcatcaccacc 3147209  T
Q  134 attgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttt 219  Q
    |||||| |||||||||||||||| ||  ||||||| | |||||| |||| | | |||||||||||||| || ||||||||||||||    
T  3147208 attgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatcaatatggatctttt 3147123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 8545687 - 8545498
Alignment:
Q  24 tcaagagaaggaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgt 123  Q
    ||||||| | |||||| | ||| |||||| |||| ||| ||||||| ||||||||||||||||| ||||||| |||||||||  ||||||| | |         
T  8545687 tcaagaggaagaacaatgaggatattagtcggaacccagaagccttgaggaggttgagaactgcctgtgagaaggcaaaaaggacactttcatacgacac 8545588  T
Q  124 tgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatgga 213  Q
    ||  ||||| |||||  ||||| |||||| |||||| |||||||||| |||||  |||| | |||||||||||||| |  ||||||||||    
T  8545587 tgaggccacaattgacctagatgctttatatcaaggtattgacttttgttcatgcatcactcgggccaagtttgagcaattgaatatgga 8545498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 13333596 - 13333756
Alignment:
Q  50 agtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcact-ttctttccttgttgttgccactattgaggtagattct 148  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||| ||||||   ||| | |||| ||| ||||  ||||| |||| |||||| ||    
T  13333596 agtgggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttctt-ttgtcaccactgttgaagtagatgct 13333694  T
Q  149 ttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatat 210  Q
    ||||||   || || |||||||||||||| |||| | | ||||| |||||||| || |||||    
T  13333695 ttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 13333756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 8570355 - 8570275
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttc 114  Q
    |||||| | ||| |||||| |||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  |||||||    
T  8570355 gaacaacgaggatattagtaggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaaggacactttc 8570275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 29577796 - 29577864
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaa 102  Q
    |||||| ||||||||||||  ||| |||||||| ||||||| | |||||||||||||||||||||||||    
T  29577796 gaacaatgtggacattagtttgaacccaaaagctttaaggaagctgagaactgcttgtgagagggcaaa 29577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 29581973 - 29582033
Alignment:
Q  42 tggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaa 102  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||||||    
T  29581973 tggacattagtgggaacccaaaagctttaaggaagctgagaacagcttgtgagagggcaaa 29582033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 219
Target Start/End: Original strand, 27831005 - 27831184
Alignment:
Q  40 agtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgag 139  Q
    |||||||||||||||||| |||| |||||| |||||| |||||||    ||||||| |||||||||  |||| |||||   |||||   | |||||||||    
T  27831005 agtggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattgag 27831104  T
Q  140 gtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttt 219  Q
     ||||| | |||||| | ||||||||||| | ||||  ||||| | | || ||||||||||| || |||||||| |||||    
T  27831105 atagatgccttatttgagggcattgacttcttttcaatgatcactcgtgcaaagtttgaggaaatcaatatggacctttt 27831184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 8538079 - 8537998
Alignment:
Q  35 aacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctt 116  Q
    |||||||| ||||||||||| ||| |||||||  | |||| |||||||||||| || |||||||||||||| || |||||||    
T  8538079 aacaaagttgacattagtggaaattcaaaagctctgaggaagttgagaactgcatgcgagagggcaaaaaggtcgctttctt 8537998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 17267965 - 17267797
Alignment:
Q  52 tgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattcttta 151  Q
    |||||| ||||||||| | ||||||||||||||||| ||||| |  ||||||||  |||||||||||     |||  ||| | ||||||||||  |||||    
T  17267965 tgggaacccaaaagccatgaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgcttta 17267866  T
Q  152 tttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatcttttt 220  Q
    ||| | ||  |||| |||||||| || |||| | | |||||||||||||| || |||||||| ||||||    
T  17267865 tttaagggtgttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggaccttttt 17267797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 8646921 - 8646739
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttc-tttccttgttgttgccac 132  Q
    |||||| |||||||||| ||| ||  ||| ||||||||||||||||||||| || || ||||| ||||||||  |||| || ||| ||| |||   ||||    
T  8646921 gaacaaggtggacattactggaaactcaagagccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttg-caccac 8646823  T
Q  133 tattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatct 216  Q
     |||||  |||||||||||||| | ||||||||||||  |||||| |||| | | ||||| ||||| |  || |||||||||||    
T  8646822 cattgaattagattctttatttaatggcattgactttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatct 8646739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 8581740 - 8581664
Alignment:
Q  38 aaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttc 114  Q
    |||| ||| |||| ||| |||||||||||| | || |||||||| |||||||||||||| || |||||  |||||||    
T  8581740 aaagaggagattattggaaatccaaaagccattagaaggttgaggactgcttgtgagagagcgaaaaggacactttc 8581664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 52549212 - 52549330
Alignment:
Q  101 aaaagatcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgagg 200  Q
    |||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||         || ||||||||||||||||||||||||||||||||||    
T  52549212 aaaagaacactttctttcgttgttgtcgccactattgaagtagattctttattt---------gatttttcttcatcgatcaatagggccaagtttgagg 52549302  T
Q  201 agatgaatatggatctttttaacgagtg 228  Q
    | ||||||||||| |||||||| |||||    
T  52549303 aaatgaatatggacctttttaaggagtg 52549330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 4678689 - 4678875
Alignment:
Q  41 gtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgagg 140  Q
    ||||||||||||  |||  ||||| |||||||||||||||||||||| || ||||||||||| ||  |||| ||||||    ||||  ||||| |||||     
T  4678689 gtggacattagtaagaacgcaaaacccttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgag- 4678787  T
Q  141 tagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    |||||||||||||||| || || |||||||||||||| || | | | |||||||||||||| || |||||||| ||||| ||||||||    
T  4678788 tagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtg 4678875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 15595078 - 15595007
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaag 105  Q
    |||||||||||| |||| |||||| ||||  ||||| ||||| ||||||||||| || || |||||||||||    
T  15595078 gaacaaagtggatattactgggaacccaagggccttgaggagattgagaactgcgtgcgaaagggcaaaaag 15595007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 28219962 - 28219768
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccact 133  Q
    |||||| |||||||||| ||| ||  ||| ||||||||||||||||||||| || ||  |||| ||||||||  |||| |||||   |||||| |||||     
T  28219962 gaacaaggtggacattactggaaactcaagagccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccacc 28219863  T
Q  134 attgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    ||||||||||||||||||||| |||||||||| || | |||||| || | | | || ||||||||||| || |||||||||||||| || |||||    
T  28219862 attgaggtagattctttatttgaaggcattgatttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttcaatgagtg 28219768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 43744860 - 43744666
Alignment:
Q  34 gaacaaagtggacattagtgggaatccaaaagccttaaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccact 133  Q
    |||||| |||||||||| ||| || |||| ||| ||||||||||||||||| || || || || ||||||||  || | |||||   ||||||  |||||    
T  43744860 gaacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccact 43744761  T
Q  134 attgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtg 228  Q
    ||||||||||||||||||||| | |||||||| || | | || | |||| | |  | ||||||||||| || ||||||||||| || ||||||||    
T  43744760 attgaggtagattctttatttgagggcattgatttctttacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtg 43744666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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