View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12711_low_7 (Length: 228)

Name: NF12711_low_7
Description: NF12711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12711_low_7
NF12711_low_7
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-228)||(34987-35214)
[»] chr4 (5 HSPs)
chr4 (1-228)||(12485263-12485490)
chr4 (21-193)||(12469159-12469331)
chr4 (3-193)||(12466498-12466687)
chr4 (95-154)||(47518421-47518480)
chr4 (75-145)||(23054177-23054254)
[»] chr5 (2 HSPs)
chr5 (95-147)||(27170059-27170111)
chr5 (95-151)||(18697029-18697085)
[»] chr2 (2 HSPs)
chr2 (98-151)||(1551571-1551624)
chr2 (75-151)||(17281887-17281970)
[»] chr8 (1 HSPs)
chr8 (95-151)||(10408921-10408977)
[»] chr1 (2 HSPs)
chr1 (95-151)||(34118068-34118124)
chr1 (65-151)||(11407917-11408011)
[»] chr6 (1 HSPs)
chr6 (95-151)||(21881563-21881619)


Alignment Details
Target: scaffold0157 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35214 - 34987
Alignment:
Q  1 cggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggtt 100  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35214 cggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtgaggtt 35115  T
Q  101 atgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggtctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35114 atgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggtctgtt 35015  T
Q  201 acgattttgagggatccttggctgtgtt 228  Q
     | |||||||||||||||||| ||||||    
T  35014 ccaattttgagggatccttggatgtgtt 34987  T

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Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12485263 - 12485490
Alignment:
Q  1 cggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggtt 100  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12485263 cggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtgaggtt 12485362  T
Q  101 atgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggtctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12485363 atgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggtctgtt 12485462  T
Q  201 acgattttgagggatccttggctgtgtt 228  Q
     | |||||||||||||||||| ||||||    
T  12485463 ccaattttgagggatccttggatgtgtt 12485490  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 12469159 - 12469331
Alignment:
Q  21 ttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgag 120  Q
    |||||||||| |||||| ||||||  ||||||||||| |||| ||||||||  |||| |||||||||||||||||||||| ||||||||||||||||| |    
T  12469159 ttcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtgaggttttgttttctcgcaacgtggg 12469258  T
Q  121 tggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg 193  Q
    | |||||||||  ||||||||||||||||||||||||||| ||||  ||||||||||||  |||||| |||||    
T  12469259 ttgtgatggactggtcacgatggtggtgatgaatatgtcacgattggtgataccaaatcaatgttcgtatatg 12469331  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 12466498 - 12466687
Alignment:
Q  3 gctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttat 102  Q
    ||||||||||||| |   |||||||||| |||||| ||||||  ||||||||||| |||| ||||||||  |||| |||||||||||||||||||||| |    
T  12466498 gctttgtttctctggttgttcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtgaggtttt 12466597  T
Q  103 gttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg 193  Q
    |||||||||||| ||| || |||||||||  |||||||||||||||||| |||||||| ||||  ||||||||||||  |||||| |||||    
T  12466598 gttttctcgcaatgtgggttgtgatggactggtcacgatggtggtgatg-atatgtcacgattggtgataccaaatcaatgttcgtatatg 12466687  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 47518421 - 47518480
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaat 154  Q
    |||||||||||| |||||||| |  ||||||||||| ||||||| |||||||||||||||    
T  47518421 gaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatgaat 47518480  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 23054177 - 23054254
Alignment:
Q  75 gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtg 145  Q
    ||||||||||||||||||||       |||||||||||| |||||||| |  ||||||||||| ||||||||||||||    
T  23054177 gatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtg 23054254  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 27170059 - 27170111
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggt 147  Q
    |||||||||||| |||||||||| |||||||||||| | ||||||||||||||    
T  27170059 gaggttatgtttgctcgcaacgtaagtggtgatggatcggtcacgatggtggt 27170111  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 18697085 - 18697029
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    |||||||||||| | |||||| |  ||||||||||| ||||||||||||||||||||    
T  18697085 gaggttatgtttgcccgcaacataggtggtgatggatcagtcacgatggtggtgatg 18697029  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 1551571 - 1551624
Alignment:
Q  98 gttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    ||||||||| |||||||| |  ||||||||||| ||||||||||||||||||||    
T  1551571 gttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtggtgatg 1551624  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 17281887 - 17281970
Alignment:
Q  75 gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    ||||||||||||||||||||       |||||||||||| |||||||| |  ||||||||||| ||||||| ||||||||||||    
T  17281887 gatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatg 17281970  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10408977 - 10408921
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    |||||||||||| |||||||| |  ||||||||||| | ||||||||||||||||||    
T  10408977 gaggttatgtttgctcgcaacataggtggtgatggaacggtcacgatggtggtgatg 10408921  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 34118124 - 34118068
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    |||||||||||| |||||||| |  ||||||||||| | ||||||||||||||||||    
T  34118124 gaggttatgtttgctcgcaacataggtggtgatggatcggtcacgatggtggtgatg 34118068  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 11407917 - 11408011
Alignment:
Q  65 gttgatatgagatttgttttctctcttggtg--------aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    |||||||| | ||||||||||||||||||||        ||||||||||| |||||||| | |||||||||||| | | ||||| ||||||||||    
T  11407917 gttgatatcatatttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatg 11408011  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 21881619 - 21881563
Alignment:
Q  95 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 151  Q
    |||||||||||| ||||||||    ||||||||||| | ||||||||||||||||||    
T  21881619 gaggttatgtttgctcgcaacaaaggtggtgatggatcggtcacgatggtggtgatg 21881563  T

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