View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12712_high_1 (Length: 535)
Name: NF12712_high_1
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 4775404 - 4775890
Alignment:
| Q |
19 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4775404 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatact---------------atgggatatgatttccat |
4775488 |
T |
|
| Q |
119 |
ttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775489 |
ttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaa |
4775588 |
T |
|
| Q |
219 |
tcttgtctttaaggaagtgatgccgtaccgaggataacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaacttgaagcttctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775589 |
tcttgtctttaaggaagtgatgccgtaccgaggataacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaacttgaagcttctt |
4775688 |
T |
|
| Q |
319 |
ggcggcaacgagatcgcgaacaaaatgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4775689 |
ggcggcaacgagatcgcgaacaaaatgataatctatggcaatatgcttcatcctagag---tgaaagacagggtttgcacatagatatgtagctccaatg |
4775785 |
T |
|
| Q |
419 |
ttttctaagaatattgttggtgccgttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgat |
518 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775786 |
ttgtcttagaatattgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgat |
4775885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 108 - 523
Target Start/End: Original strand, 43060836 - 43061251
Alignment:
| Q |
108 |
atgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatc |
207 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
43060836 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagttaatactcctacacgcccgctcaagatggaggtatcatc |
43060935 |
T |
|
| Q |
208 |
aataactccaatcttgtctttaaggaagtgatgccgtaccgaggataacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
43060936 |
aataactccaatcttgtctttaaggaagtgatgtcgtaccgaggataacggctttgtgagaagatcgggtagctgatgacttgttgggacatgtgaaact |
43061035 |
T |
|
| Q |
308 |
tgaagcttcttg---gcggcaacgagatcgcgaacaaaatgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagag |
404 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||||||||||||||||||||| || ||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
43061036 |
tgaagcttcttggcagcagcaacgagatcgcaaacaaaatgataatctatggcaatgtgtttcatccta---tagtgaaaaacagggtttgcacatagat |
43061132 |
T |
|
| Q |
405 |
atgtagctccaatgttttctaagaatattgttggtgccgttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggc |
504 |
Q |
| |
|
||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43061133 |
atgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggc |
43061232 |
T |
|
| Q |
505 |
tgctatagtacgatattca |
523 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
43061233 |
tgctatagtccgatattca |
43061251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 448512 - 448677
Alignment:
| Q |
19 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccat |
118 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
448512 |
gtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgatttccat |
448611 |
T |
|
| Q |
119 |
ttacagatattattacaaccattattctttgatttggtcaatgc---ttaagttaatactcctaca |
181 |
Q |
| |
|
|||| |||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
448612 |
ttactgatattattacacccatcattatttgatttggtcaatgctaattaagttaatactcctaca |
448677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
380 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
420 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 42019449 - 42019520
Alignment:
| Q |
163 |
ttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaa |
234 |
Q |
| |
|
|||||| ||||||||| || |||||| || | |||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
42019449 |
ttaagtaaatactcctttactccccctgaaaatggagttatcttcaagaactccaatcttgtctttaaggaa |
42019520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University