View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12712_high_2 (Length: 455)

Name: NF12712_high_2
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12712_high_2
NF12712_high_2
[»] chr7 (18 HSPs)
chr7 (27-439)||(48078554-48078966)
chr7 (336-396)||(16780767-16780827)
chr7 (326-396)||(101284-101354)
chr7 (342-396)||(35851974-35852028)
chr7 (310-382)||(5815091-5815163)
chr7 (342-396)||(5721703-5721757)
chr7 (342-396)||(25690737-25690791)
chr7 (343-412)||(31726653-31726722)
chr7 (344-396)||(11329508-11329560)
chr7 (342-396)||(11754696-11754750)
chr7 (326-396)||(41195712-41195782)
chr7 (343-382)||(21346400-21346439)
chr7 (325-396)||(22181644-22181715)
chr7 (339-374)||(23018505-23018540)
chr7 (327-382)||(42094325-42094380)
chr7 (315-401)||(38482356-38482440)
chr7 (342-382)||(23937773-23937813)
chr7 (344-396)||(45773219-45773271)
[»] chr3 (11 HSPs)
chr3 (342-396)||(25258079-25258133)
chr3 (342-394)||(37058992-37059044)
chr3 (325-396)||(581047-581118)
chr3 (342-401)||(12767337-12767396)
chr3 (342-382)||(54905139-54905179)
chr3 (315-358)||(24498265-24498308)
chr3 (336-382)||(40413436-40413482)
chr3 (342-396)||(27177341-27177395)
chr3 (256-289)||(41767509-41767542)
chr3 (325-394)||(50670088-50670157)
chr3 (342-382)||(52205046-52205085)
[»] chr8 (15 HSPs)
chr8 (294-412)||(34273092-34273210)
chr8 (326-396)||(38924419-38924489)
chr8 (328-396)||(32729435-32729503)
chr8 (342-394)||(33435410-33435462)
chr8 (341-396)||(8238771-8238826)
chr8 (342-396)||(9030609-9030663)
chr8 (315-394)||(559976-560055)
chr8 (342-397)||(29204623-29204678)
chr8 (315-396)||(10340240-10340321)
chr8 (329-396)||(960064-960131)
chr8 (343-382)||(30370054-30370093)
chr8 (258-287)||(30366524-30366553)
chr8 (342-395)||(33542104-33542156)
chr8 (329-373)||(36110625-36110669)
chr8 (352-396)||(36203388-36203432)
[»] chr4 (11 HSPs)
chr4 (326-395)||(24673011-24673080)
chr4 (339-396)||(25844265-25844322)
chr4 (345-396)||(5961799-5961850)
chr4 (336-396)||(79519-79579)
chr4 (342-394)||(40423324-40423376)
chr4 (343-398)||(2604027-2604082)
chr4 (325-394)||(37397944-37398013)
chr4 (326-389)||(24672711-24672774)
chr4 (342-396)||(9954540-9954594)
chr4 (342-396)||(11548167-11548221)
chr4 (329-382)||(24671052-24671105)
[»] chr2 (13 HSPs)
chr2 (315-396)||(28314647-28314728)
chr2 (325-382)||(15404950-15405007)
chr2 (342-401)||(21488862-21488921)
chr2 (342-396)||(15538955-15539009)
chr2 (342-396)||(8476953-8477007)
chr2 (340-398)||(15605402-15605460)
chr2 (336-381)||(11279976-11280021)
chr2 (327-396)||(14442117-14442186)
chr2 (341-394)||(34557335-34557388)
chr2 (343-383)||(10633408-10633448)
chr2 (342-381)||(4422823-4422862)
chr2 (345-396)||(37172605-37172656)
chr2 (342-396)||(12670787-12670841)
[»] chr1 (16 HSPs)
chr1 (323-379)||(17916170-17916226)
chr1 (325-396)||(25484966-25485037)
chr1 (345-407)||(5760047-5760109)
chr1 (339-377)||(9450235-9450273)
chr1 (346-412)||(17492734-17492800)
chr1 (328-382)||(32191144-32191198)
chr1 (326-396)||(34123167-34123237)
chr1 (357-396)||(768312-768351)
chr1 (341-396)||(1831257-1831312)
chr1 (295-368)||(31847369-31847442)
chr1 (342-382)||(12082185-12082225)
chr1 (259-289)||(35214776-35214806)
chr1 (342-383)||(1245946-1245986)
chr1 (328-380)||(40072989-40073042)
chr1 (343-394)||(8041143-8041195)
chr1 (346-382)||(42826424-42826460)
[»] chr6 (4 HSPs)
chr6 (292-412)||(32820792-32820912)
chr6 (305-383)||(20694575-20694653)
chr6 (342-382)||(22682593-22682633)
chr6 (329-396)||(9993104-9993171)
[»] chr5 (8 HSPs)
chr5 (342-394)||(14105979-14106031)
chr5 (342-394)||(16302635-16302687)
chr5 (348-412)||(18398578-18398642)
chr5 (326-394)||(23311781-23311849)
chr5 (342-394)||(33270023-33270075)
chr5 (325-396)||(9962909-9962980)
chr5 (347-401)||(7963179-7963233)
chr5 (315-396)||(35943520-35943601)
[»] scaffold0223 (1 HSPs)
scaffold0223 (345-396)||(16335-16386)
[»] scaffold0471 (1 HSPs)
scaffold0471 (329-373)||(493-537)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 27 - 439
Target Start/End: Complemental strand, 48078966 - 48078554
Alignment:
Q  27 tatatgcatcatatcatactcatactgtgtatctggacttcatagcaactagtagatgtgcatctgagtattttgaaaagcgaaaagaattagattaact 126  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48078966 tatatgtatcatatcgtactcatactgtgtatctggacttcatagcaaccggtagatgtgcatctgagtattttgaaaagcgaaaagaattagattaact 48078867  T
Q  127 tgttgatatgtactnnnnnnngaggggtgctaatagtaagccacttgagaaattttcataaatacaataactaagtacagtttttaaactttaaattaca 226  Q
    ||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48078866 tgttgatgtgtactaaaaaa-gaggggtgctaatagtaagccacttgagaaattttcataaatacaataactaagtacagtttttagactttaaattaca 48078768  T
Q  227 agctcattactaacacttttgacttaccatttgaaaattgttcttctcccttttaaaattgttgttagagttaacttccgctcatcaattttcaactaga 326  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  48078767 agcccattactaacacttttggcttaccatttgaaaattgttcttctcccttttaaaattattgttagagttaacttccgccaatcatttttcaactaga 48078668  T
Q  327 gttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtggaagttaaccttagttgg-agat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48078667 gttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtgggagttaaccttagttggaagat 48078568  T
Q  426 gtcaagcaatagtt 439  Q
    ||||||| ||||||    
T  48078567 gtcaagccatagtt 48078554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 16780767 - 16780827
Alignment:
Q  336 cgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  16780767 cgttgacacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagt 16780827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 101284 - 101354
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| || || ||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||    
T  101284 agttaactcacgctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgatctaaaaagt 101354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 35851974 - 35852028
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  35851974 cacttttaagatcggttgaaccgacttagaaagtgattgaaccgatcttaaaagt 35852028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 5815091 - 5815163
Alignment:
Q  310 atcaattttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||||||||   ||| ||||| | ||||||||||||||||||||||| | |||||||||||||||||||    
T  5815091 atcaattttcaacggtagtaaactcacattggcacttttaagatcggttgacctgacttaaaaagtgattgaa 5815163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 5721757 - 5721703
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||||||| || |||||| ||||||| ||||||||||||    
T  5721757 cacttttaagatcggttgaaccgatttgaaaagtaattgaatcgatcttaaaagt 5721703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 25690791 - 25690737
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||    
T  25690791 cacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagt 25690737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 31726653 - 31726722
Alignment:
Q  343 acttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtggaagttaac 412  Q
    |||||||||||||||||||||| |||||||  ||||||||  || ||||||||| |||||| ||||||||    
T  31726653 acttttaagatcggttgaaccggcttaaaatatgattgaaccgaacttaaaagtgttagtgtaagttaac 31726722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 11329560 - 11329508
Alignment:
Q  344 cttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||| ||||||||||||||||||| ||||  |||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagt 11329508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 11754696 - 11754750
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||| |||||||||||  |||||||||||||||  ||||||||||||    
T  11754696 cacttttaagattggttgaaccgagataaaaagtgattgaaccgatcttaaaagt 11754750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 41195782 - 41195712
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||  |||| ||||||||||||| ||||||||  ||||||||||||||||||  | |||||||||    
T  41195782 agttaactcaagttgacacttttaagatcagttgaaccagcttaaaaagtgattgaatcaaccttaaaagt 41195712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 21346439 - 21346400
Alignment:
Q  343 acttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  21346439 acttttaaggtcggttgaaccaacttaaaaagtgattgaa 21346400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 22181644 - 22181715
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||  |||||||||| || ||||| |  ||||| |||||||||||||| ||||||| ||||||||    
T  22181644 gagttaactcaagttggcacttgtatgatcgatacaaccgtcttaaaaagtgattaaattgattttaaaagt 22181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 23018505 - 23018540
Alignment:
Q  339 tggcacttttaagatcggttgaaccgacttaaaaag 374  Q
    |||||||||||||||||||| |||||||||||||||    
T  23018505 tggcacttttaagatcggttaaaccgacttaaaaag 23018540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 42094325 - 42094380
Alignment:
Q  327 gttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||| ||||| ||||||||||| ||||| | | |||||||||||||||||||    
T  42094325 gttaactcacgttgacacttttaagaccggttaacctgacttaaaaagtgattgaa 42094380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 38482356 - 38482440
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattag 401  Q
    |||||| |||||||||||||||| || || |||||| | ||||| ||| |||||||||||||||| |||  ||||||||||| ||||    
T  38482356 ttttcagctagagttaactctcgctgaca-ttttaaaa-cggtttaactgacttaaaaagtgattaaatcaatcttaaaagtgttag 38482440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 23937813 - 23937773
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||||||||||||| |||||| ||||||||| ||||||    
T  23937813 cacttttaagatcggttaaaccgatttaaaaagtaattgaa 23937773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 45773271 - 45773219
Alignment:
Q  344 cttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||| |||||||||| | |||||||||||||||  ||||| ||||||    
T  45773271 cttttaagattggttgaaccggcgtaaaaagtgattgaaccgatctaaaaagt 45773219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 25258079 - 25258133
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25258079 cacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagt 25258133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 37058992 - 37059044
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  37058992 cacttttaagatcggttgaatcgacttaaaaaatgattgaatcgatcttaaaa 37059044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 581047 - 581118
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||| || ||| |||||||||||||||||||| |||||||||||| ||||||  | ||||||||||    
T  581047 gagttaactcacgctggtacttttaagatcggttgaacagacttaaaaagttattgaacgggtcttaaaagt 581118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 12767337 - 12767396
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattag 401  Q
    ||||| ||||||||||||| |||||||||||||||||||||  |||||||||||| ||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttag 12767396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 54905179 - 54905139
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  54905179 cacttttaagatcggttaaaccgacttaaaaagtgattgaa 54905139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 24498308 - 24498265
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggtt 358  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  24498308 ttttcagctagggttaactctcgttggcacttttaagatcggtt 24498265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 40413436 - 40413482
Alignment:
Q  336 cgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||| | |||||||||||||||| |||||||||||||||||||||    
T  40413436 cgttggtaattttaagatcggttgacccgacttaaaaagtgattgaa 40413482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 27177395 - 27177341
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||||||| || ||||||||| ||||||||  ||||| ||||||    
T  27177395 cacttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagt 27177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 41767509 - 41767542
Alignment:
Q  256 tttgaaaattgttcttctcccttttaaaattgtt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  41767509 tttgaaaattgtccttctcccttttaaaattgtt 41767542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 50670088 - 50670157
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    |||||||||  || || ||||||||| |||||||||||  || |||||| ||||||||| ||||||||||    
T  50670088 gagttaacttacgctgacacttttaaaatcggttgaacttacgtaaaaaatgattgaatcgatcttaaaa 50670157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 52205046 - 52205085
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  52205046 cacttttaagatcggttgacccgactt-aaaagtgattgaa 52205085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 34273092 - 34273210
Alignment:
Q  294 gagttaacttccgctcatcaattttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaa 393  Q
    ||||||||||| ||||  || |||||| |  || ||||||| || || ||||||||| |||||||||||||||||||| ||||||||||  |||||||||    
T  34273092 gagttaacttctgctcggcatttttcagcgtgaattaactcacgctgacacttttaaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaa 34273191  T
Q  394 agtattagtggaagttaac 412  Q
    |||| |||||  |||||||    
T  34273192 agtactagtgtgagttaac 34273210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 38924489 - 38924419
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| || || ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  38924489 agttaactcacgctgtcacttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaaagt 38924419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 32729503 - 32729435
Alignment:
Q  328 ttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||| ||| || |||||||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  32729503 ttaactgtcgctgacacttttaagatcggttgaaccgacttaaaaaataattgaactgatcttaaaagt 32729435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 33435410 - 33435462
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  33435410 cacttttaagatcggttgaaccgacttaaaaagtaattaaactgatcttaaaa 33435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 8238826 - 8238771
Alignment:
Q  341 gcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||    
T  8238826 gcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagt 8238771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 9030663 - 9030609
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||    
T  9030663 cacttttaagatcaattgaaccgatttaaaaagtgattgaatcgatcttaaaagt 9030609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 560055 - 559976
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||  |||||||||| || ||||| |||||| |||||||||||| ||||||||| | ||||||| | ||||||||    
T  560055 ttttcaacgtgagttaactcacgctggcaattttaaaatcggttgaaccaacttaaaaaataattgaatcggtcttaaaa 559976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 29204678 - 29204623
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagta 397  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||| |||||||||    
T  29204678 cacttttaagatcagttgatccgacttaaaaagtgattgaaccgattttaaaagta 29204623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 10340321 - 10340240
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||  |||||||||| || || |||||||||||||||  || || ||||||||| ||||||||| ||||| ||||||    
T  10340321 ttttcaacgtgagttaactcacgctgacacttttaagatcggccgacccaacttaaaaaatgattgaatcgatctaaaaagt 10340240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 960064 - 960131
Alignment:
Q  329 taactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||| ||||| ||||| ||| ||| |||||| |  |||||||||||||||||||||| ||||||||    
T  960064 taactcacgttgacacttataaaatcagttgaatcagcttaaaaagtgattgaattgattttaaaagt 960131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 30370054 - 30370093
Alignment:
Q  343 acttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30370054 acttttaaaatcggttgaaccaacttaaaaagtgattgaa 30370093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 30366524 - 30366553
Alignment:
Q  258 tgaaaattgttcttctcccttttaaaattg 287  Q
    ||||||||||||||||||||||||||||||    
T  30366524 tgaaaattgttcttctcccttttaaaattg 30366553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 33542104 - 33542156
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaag 395  Q
    |||||||||||||||||||| ||||||||||| ||| |||| | ||||||||||    
T  33542104 cacttttaagatcggttgaa-cgacttaaaaaatgactgaactaatcttaaaag 33542156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 36110625 - 36110669
Alignment:
Q  329 taactctcgttggcacttttaagatcggttgaaccgacttaaaaa 373  Q
    ||||| ||| || ||||||||||||| ||||||||||||||||||    
T  36110625 taactatcgctgacacttttaagatcagttgaaccgacttaaaaa 36110669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 36203388 - 36203432
Alignment:
Q  352 atcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||| ||||||||||| |  |||||||||||    
T  36203388 atcggttgaaccgacttataaagtgattgagtcaatcttaaaagt 36203432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 24673011 - 24673080
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaag 395  Q
    ||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||| |||||| |||||    
T  24673011 agttaactcacgttggcacttttaagattggttgacccgacataaaaagtgattgaactgatctaaaaag 24673080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 25844265 - 25844322
Alignment:
Q  339 tggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||  |||||||||||    
T  25844265 tggcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagt 25844322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 5961850 - 5961799
Alignment:
Q  345 ttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  5961850 ttttaagatcggttgagccaacttaaaaagtgattgaactgatcttaaaagt 5961799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 79519 - 79579
Alignment:
Q  336 cgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||| ||||||||||||| ||||| |||||||||||||||||||||  ||||| ||||||    
T  79519 cgttgtcacttttaagatcagttgacccgacttaaaaagtgattgaaccgatctaaaaagt 79579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 40423324 - 40423376
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||||||  |||||||||||||||||||||||||||  ||||||||||    
T  40423324 cacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaa 40423376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 2604082 - 2604027
Alignment:
Q  343 acttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtat 398  Q
    |||||||||||| |||||||||| ||||||| ||||||||| ||| ||||||||||    
T  2604082 acttttaagatcagttgaaccgatttaaaaaatgattgaatcgattttaaaagtat 2604027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 37397944 - 37398013
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    |||||||||| || ||| |  |||||||| |||||||| |||||||||||||||||||  ||||||||||    
T  37397944 gagttaactcacgctggaatgtttaagattggttgaactgacttaaaaagtgattgaaccgatcttaaaa 37398013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 24672711 - 24672774
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatct 389  Q
    ||||||||| ||||| |||||||   ||||||| | |||||||||||||||||||||| |||||    
T  24672711 agttaactcacgttgacactttttttatcggtttatccgacttaaaaagtgattgaatcgatct 24672774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 9954594 - 9954540
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||| |||| || ||||||||| | ||||||||||||| ||||||    
T  9954594 cacttttaagatcgattgacccaacttaaaaaataattgaattgatctaaaaagt 9954540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 11548167 - 11548221
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| |||||| |||||||||||||||| || ||||  ||||||||||||    
T  11548167 cacttttaacatcggtcgaaccgacttaaaaagcgaatgaaccgatcttaaaagt 11548221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 24671052 - 24671105
Alignment:
Q  329 taactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||| || ||| |||||| |||| ||||||||||||| ||||||||||||||    
T  24671052 taactcacgctggtactttttagattggttgaaccgactaaaaaagtgattgaa 24671105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 28314647 - 28314728
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||||||||  | || ||||||||||||||||| |||| | ||||||||||||||||  ||||||||||||    
T  28314647 ttttcaactagagttaactcctgctgacacttttaagatcggttcaaccaatttaaaaagtgattgaaccgatcttaaaagt 28314728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 15405007 - 15404950
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  15405007 gagttaactcacgttgacacttttaaaatcggttgacccgacttaaaaagtgattgaa 15404950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 21488921 - 21488862
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattag 401  Q
    ||||||||||||||||||||| |||||||||| ||||||||  |||||||||||| ||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgttag 21488862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 15539009 - 15538955
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  15539009 cacttttaagatcgattgaaccgacttaaaaagtaattgaaccgatcttaaaagt 15538955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 8477007 - 8476953
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||  |||||||| ||||| ||||| ||||||||||||||||||||    
T  8477007 cacttttaagattagttgaacccacttagaaagtaattgaattgatcttaaaagt 8476953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 15605402 - 15605460
Alignment:
Q  340 ggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtat 398  Q
    |||| ||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||    
T  15605402 ggcatttttaagatcggttgaatcgactgaagaagtgattgaactgatcttataagtat 15605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 11279976 - 11280021
Alignment:
Q  336 cgttggcacttttaagatcggttgaaccgacttaaaaagtgattga 381  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  11279976 cgttgacaattttaaaatcggttgaaccgacttaaaaagtgattga 11280021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 14442186 - 14442117
Alignment:
Q  327 gttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||| || | |||| ||||||||| |||||| || ||||||||||||||| | |||||||||||||    
T  14442186 gttaactcacgctagcacctttaagatcagttgaatcggcttaaaaagtgattgtactgatcttaaaagt 14442117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 34557335 - 34557388
Alignment:
Q  341 gcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||  ||||||||||    
T  34557335 gcacttttaagatcgattgaaccgatttaaaaaatgattgaacagatcttaaaa 34557388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 10633448 - 10633408
Alignment:
Q  343 acttttaagatcggttgaaccgacttaaaaagtgattgaat 383  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaat 10633408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 4422823 - 4422862
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattga 381  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattga 4422862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 37172605 - 37172656
Alignment:
Q  345 ttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| |||||||| |||||||||||||||||||  ||| ||||||||    
T  37172605 ttttaagattggttgaactgacttaaaaagtgattgaaccgatgttaaaagt 37172656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 12670841 - 12670787
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||  || |||||||| ||||||||  ||||||||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagt 12670787  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 17916170 - 17916226
Alignment:
Q  323 tagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgatt 379  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  17916170 tagagttaactctcgctgacacttttaagatcgattgaaccgacttaaaaagtgatt 17916226  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 25485037 - 25484966
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||| || || |||||||||||||| |||||  | |||||||||||||||||||||||||||||||    
T  25485037 gagttaactcacgctgccacttttaagatcgtttgaattggcttaaaaagtgattgaattgatcttaaaagt 25484966  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 5760109 - 5760047
Alignment:
Q  345 ttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtggaag 407  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||| |||||    
T  5760109 ttttaagatcggttgaagcgacttaaaaagtgattgaagcgatcttaaaagttttagcggaag 5760047  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 9450273 - 9450235
Alignment:
Q  339 tggcacttttaagatcggttgaaccgacttaaaaagtga 377  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9450273 tggcacttttaagatcggttgaaccgacttaaaaagtga 9450235  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 17492734 - 17492800
Alignment:
Q  346 tttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtggaagttaac 412  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| |||||||| | ||||| |||||||    
T  17492734 tttaagatcagttgaatcgacttaaaaagtgattgaatcgatattaaaagtgtcagtggtagttaac 17492800  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 32191144 - 32191198
Alignment:
Q  328 ttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||    
T  32191144 ttaactcacgctggcacttttaagatcggttgaaccaacttaaaaaatgattgaa 32191198  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 34123167 - 34123237
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| || || ||||||||| ||||||||||||  |||||||||||||||| ||||| ||||||||    
T  34123167 agttaactcacgctgacacttttaaaatcggttgaaccagcttaaaaagtgattgagttgatattaaaagt 34123237  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 768312 - 768351
Alignment:
Q  357 ttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  768312 ttgaaccgacttaaaaagtgattgaactgatcttaaaagt 768351  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 1831257 - 1831312
Alignment:
Q  341 gcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||||||| ||||||||||||||||||| |||| ||  ||||||||||||    
T  1831257 gcacttttaagatcagttgaaccgacttaaaaagcgattaaaccgatcttaaaagt 1831312  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 31847369 - 31847442
Alignment:
Q  295 agttaacttccgctcatcaattttcaactagagttaactctcgttggcacttttaagatcggttgaaccgactt 368  Q
    ||||||||| |||||  || |||||| |  ||||||||||||| || |||||||||||||||| ||||||||||    
T  31847369 agttaacttacgctcgacatttttcagcgtgagttaactctcgctgacacttttaagatcggtcgaaccgactt 31847442  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 12082225 - 12082185
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  12082225 cacttttaagatcggttgacccgacttacaaagtgattgaa 12082185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 289
Target Start/End: Complemental strand, 35214806 - 35214776
Alignment:
Q  259 gaaaattgttcttctcccttttaaaattgtt 289  Q
    |||||||||||||||||||||||||||||||    
T  35214806 gaaaattgttcttctcccttttaaaattgtt 35214776  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 1245946 - 1245986
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaat 383  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  1245946 cacttttaagatcggttgaactga-ttaaaaagtgattgaat 1245986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 40073042 - 40072989
Alignment:
Q  328 ttaactctcgttgg-cacttttaagatcggttgaaccgacttaaaaagtgattg 380  Q
    |||||| ||||||| |||||||||||||| || |||||||||||| ||||||||    
T  40073042 ttaactatcgttggacacttttaagatcgattaaaccgacttaaagagtgattg 40072989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 8041195 - 8041143
Alignment:
Q  343 acttttaagat-cggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||||| |||||||||| ||||||||| ||||||||  ||||||||||    
T  8041195 acttttaagattcggttgaaccaacttaaaaattgattgaaccgatcttaaaa 8041143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 42826424 - 42826460
Alignment:
Q  346 tttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||| |||| |||||||||||||||||||||||    
T  42826424 tttaagattggttaaaccgacttaaaaagtgattgaa 42826460  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 32820912 - 32820792
Alignment:
Q  292 tagagttaacttccgctcatcaattttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatctta 391  Q
    ||||||||||||||||||  || ||||||  |||||||||| || | || ||||||||| ||| |||||||| ||||||||||||  ||||  |||||||    
T  32820912 tagagttaacttccgctcgacatttttcagttagagttaacacttgctgtcacttttaacatcagttgaaccaacttaaaaagtgtctgaaccgatctta 32820813  T
Q  392 aaagtattagtggaagttaac 412  Q
    | ||| | ||||| |||||||    
T  32820812 atagtgtcagtgggagttaac 32820792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 20694575 - 20694653
Alignment:
Q  305 cgctcatcaattttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaat 383  Q
    |||||| || |||||| | | ||||||||| || ||||||||||||||| ||||||  | |||||||||||||||||||    
T  20694575 cgctcaacatttttcagcgatagttaactcacggtggcacttttaagattggttgactcaacttaaaaagtgattgaat 20694653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 22682633 - 22682593
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaa 382  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  22682633 cacttttaagatcggttgaaccaacttaaaaaatgattgaa 22682593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 9993104 - 9993171
Alignment:
Q  329 taactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||| ||| ||||| |||||||||| |||| || |||||||||||||||||||   |||||||||||    
T  9993104 taactgtcgctggcatttttaagatccgttggacggacttaaaaagtgattgaacatatcttaaaagt 9993171  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 14105979 - 14106031
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||||||||||  |||| ||||||||||||||||||  ||||||||||    
T  14105979 cacttttaagatcggtcaaaccaacttaaaaagtgattgaaccgatcttaaaa 14106031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 16302687 - 16302635
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||| ||||||    
T  16302687 cacttttaagatcggttaaaccgacttaaaatctgattgaactgattttaaaa 16302635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 18398578 - 18398642
Alignment:
Q  348 taagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattagtggaagttaac 412  Q
    |||||||||||||||||  ||||||||||| ||||  |||||||||||| | |||| ||||||||    
T  18398578 taagatcggttgaaccggtttaaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaac 18398642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 23311849 - 23311781
Alignment:
Q  326 agttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    ||||||||| ||||| |||||||||||| |||||||| |||||||||| | ||| ||  ||||||||||    
T  23311849 agttaactcacgttgacacttttaagattggttgaactgacttaaaaaataatttaaccgatcttaaaa 23311781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 33270075 - 33270023
Alignment:
Q  342 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaa 394  Q
    |||||||||||| |||||||||||||||||| |||||| ||| ||| ||||||    
T  33270075 cacttttaagattggttgaaccgacttaaaatgtgattaaatcgatgttaaaa 33270023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 9962909 - 9962980
Alignment:
Q  325 gagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    |||||||||| || | ||| |||||||||||||||||||   || ||||||||||||||  |||||||||||    
T  9962909 gagttaactcacgctagcatttttaagatcggttgaaccagattgaaaagtgattgaatcaatcttaaaagt 9962980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 7963179 - 7963233
Alignment:
Q  347 ttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattag 401  Q
    |||||||||||||| |||||| |||| |||||||||| ||| |||||||| ||||    
T  7963179 ttaagatcggttgacccgactgaaaatgtgattgaatcgattttaaaagtgttag 7963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 35943520 - 35943601
Alignment:
Q  315 ttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||| ||||||||||  | || || | |||| ||||||||||| |||||||||| | ||||||  ||||||||||||    
T  35943520 ttttcaacttgagttaactcatgctgacattcttaaaatcggttgaactgacttaaaaaataattgaaccgatcttaaaagt 35943601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 16386 - 16335
Alignment:
Q  345 ttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 396  Q
    ||||||||||||||||||||| ||||||||| ||||||  | ||||||||||    
T  16386 ttttaagatcggttgaaccgatttaaaaagtaattgaaccggtcttaaaagt 16335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 493 - 537
Alignment:
Q  329 taactctcgttggcacttttaagatcggttgaaccgacttaaaaa 373  Q
    ||||| ||| || ||||||||||||| ||||||||||||||||||    
T  493 taactatcgctgacacttttaagatcagttgaaccgacttaaaaa 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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