View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12712_high_6 (Length: 257)
Name: NF12712_high_6
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_high_6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 39092271 - 39092513
Alignment:
| Q |
15 |
gaggttgttgcaaatgatggaacatgatgtgttattgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaatag |
114 |
Q |
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| T |
39092271 |
gaggttgttgcaaaggatggaacatgatgtgttgttgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaatag |
39092370 |
T |
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| Q |
115 |
gaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttgatgtgctaggaatgggttgttggtgaaaaagaaggcctgtttggatgg |
214 |
Q |
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| T |
39092371 |
gaaagtgttgtggaaagggtttgtttcaaatggttgatttggttttggtttgatgtgctaggaatgggttgttggtgaaaaagaaggcctttttggatgg |
39092470 |
T |
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| Q |
215 |
tttcaagtggaaggaatcggagatcccatggtgttaaattgat |
257 |
Q |
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| T |
39092471 |
tttcaagtggaaggaatcggagatcccatggtgttaaattgat |
39092513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 39071771 - 39071987
Alignment:
| Q |
16 |
aggttgttgcaaatgatggaacatgatgtgttattgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaatagg |
115 |
Q |
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| T |
39071771 |
aggttgttgcaaattatggaacatgatgtgtt---gttgttgtttgtggtcacgttgtgttgggtgattataagacggc---ttaagggtgggaaataag |
39071864 |
T |
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| Q |
116 |
aaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttgatgtgctaggaatgggttgttggtgaaaaagaaggcctgtttggatggt |
215 |
Q |
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| T |
39071865 |
agagtgttgtagaaagtgtttgtttcaaatggttgatttggttttggttt---------ggaatgg---gttggtggaaaagatggcctctttggatggt |
39071952 |
T |
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| Q |
216 |
ttcaagtggaaggaatcggagatcccatggtgtta |
250 |
Q |
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| T |
39071953 |
ttcaagtggaaggaattggagatcccatggtgtta |
39071987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 39088883 - 39089025
Alignment:
| Q |
18 |
gttgttgcaaatgatggaacatgatgtgttattgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaa |
117 |
Q |
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| T |
39088883 |
gttgttgcaaatgatggaacatgatgtgtt------gttgtttgtggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaa |
39088976 |
T |
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| Q |
118 |
agtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttg |
166 |
Q |
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| T |
39088977 |
agtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttg |
39089025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 39083227 - 39083386
Alignment:
| Q |
16 |
aggttgttgcaaatgatggaacatgatg---------tgttattgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtg |
106 |
Q |
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| T |
39083227 |
aggttgttgcaaatgatggaacatgatgcattgttgttgttgttgttgttgtttgtggtcacgttgtgttgggtgattatgagacggcctgttaagagtg |
39083326 |
T |
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| Q |
107 |
ggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttg |
166 |
Q |
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| T |
39083327 |
ggaaataggaaagtgttgtagaaagtgtttgtttcaaatggttgatttggttttggtttg |
39083386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 39083384 - 39083449
Alignment:
| Q |
186 |
ttggtgaaaaagaaggcctgtttggatggtttcaagtggaaggaatcggagatcccatggtgttaa |
251 |
Q |
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| T |
39083384 |
ttggtggaaaagaaggcctttttggatggtttcaagtgggagaaattgaagatcccatggtgttaa |
39083449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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