View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12712_low_11 (Length: 206)
Name: NF12712_low_11
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 40643908 - 40644088
Alignment:
| Q |
11 |
agcacagacttgcttctgtcacctttaacctctgatggcggaatagatgtattcactctaagcatcatcttgcaaacttgacttcttttatttatgtatt |
110 |
Q |
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| T |
40643908 |
agcacagacttgcttctgtcacctttaacctctgatggcggaatagatgtattcactctaagtatcatcttgcaaacttgacttctttcttttatgtatt |
40644007 |
T |
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| Q |
111 |
ttctctctttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaag |
191 |
Q |
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| T |
40644008 |
ttctctctttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaag |
40644088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 40652580 - 40652758
Alignment:
| Q |
13 |
cacagacttgcttctgtcacctttaacctctgatggcggaatagatgtattcactctaagcatcatcttgcaaacttgacttcttttatttatgtatttt |
112 |
Q |
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| T |
40652580 |
cacagatttgcttctatcacctttaacctctgatggtagaatatctgtattcactctaagtatcatcttgcaaacttgacttctctcttttatgtatttt |
40652679 |
T |
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| Q |
113 |
ctctctttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaag |
191 |
Q |
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| T |
40652680 |
ctctctttcaaaagttcatccacctctgcacacgtgtcttcaaatctgatctgtcctattccattgggcagcaaaaaag |
40652758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 40642718 - 40642750
Alignment:
| Q |
141 |
cacatgtgtcttcaaatctgatctgtcctattc |
173 |
Q |
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| T |
40642718 |
cacatgtgtcttcaaatctgatctgtcatattc |
40642750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 535163 - 535110
Alignment:
| Q |
17 |
gacttgcttctgtcacctttaacctctgatggcggaatagatgtattcactcta |
70 |
Q |
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| T |
535163 |
gacttgcttttatcacctttaacctctgatggtggaatatatgtattcactcta |
535110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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