View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12712_low_3 (Length: 351)
Name: NF12712_low_3
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 328
Target Start/End: Complemental strand, 44968058 - 44967753
Alignment:
| Q |
23 |
aaaaagcataataaattaaacttaaaacaatgaaaatgaattgaagatgtatgtgctttttccttatttttgcagtattggagaaaaatgaaagtaggat |
122 |
Q |
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| T |
44968058 |
aaaaagcataataaattaaacttaaaacaatgaaaatgaattgaagatgtatgcactttttccttatttttgcagtattggagaaaaatgaaagtaggat |
44967959 |
T |
|
| Q |
123 |
aggaagagtgagtaaactgagcaatcttcgtagaggcttcaatggagaacacaatgaaaaattaggaaatttgacaacctaaaatcagaactgaagggaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
44967958 |
aggaagagtgagtaaactgagcaatcttcgtagaggcttcaatggagaacacaatgaaaaattaggaaatttgacaaactaaaatcagaattgaagggaa |
44967859 |
T |
|
| Q |
223 |
aaaaggatgatgccatccatgaaattgaacaaattgagatggacaagcatcaatattacagaagaataataaactagagagaattcttccaagcgagaca |
322 |
Q |
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| T |
44967858 |
aataggatgatgccatccatgaaattgaacaaattgagatggacaagcatcaatattacagaagaataataaactatagagaattcttgcaagcgagaca |
44967759 |
T |
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| Q |
323 |
cggaac |
328 |
Q |
| |
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| |||| |
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| T |
44967758 |
ctgaac |
44967753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 14054451 - 14054503
Alignment:
| Q |
23 |
aaaaagcataataaattaaacttaaaacaatgaaaatgaattgaagatgtatg |
75 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
14054451 |
aaaaagcataataaattaaacttaaaaaaatgaaaatgaattgaagatatatg |
14054503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 13183706 - 13183607
Alignment:
| Q |
99 |
attggagaaaaatgaaagtaggataggaagagtgagtaaactgagcaatcttcgtagaggcttcaatggagaacacaatgaaaaattaggaaatttgaca |
198 |
Q |
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| T |
13183706 |
attggagaaaaacgaaaatggggtaggaagagtgaggaagctgtgcaatattcatagaagcatcaatggagaacacggtg-aaaattataaaatttgaca |
13183608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 21050945 - 21050990
Alignment:
| Q |
30 |
ataataaattaaacttaaaacaatgaaaatgaattgaagatgtatg |
75 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
21050945 |
ataataaattaaacttaaaacaagaaaaatgaattgaagatctatg |
21050990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21063161 - 21063201
Alignment:
| Q |
30 |
ataataaattaaacttaaaacaatgaaaatgaattgaagat |
70 |
Q |
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||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
21063161 |
ataataaattaaacttaaaacaagaaaaattaattgaagat |
21063201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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