View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12712_low_4 (Length: 345)
Name: NF12712_low_4
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 11597582 - 11597258
Alignment:
| Q |
1 |
aaattacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggaaaatcaagagttacctcc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597582 |
aaatcacacatatttcaactaagaagagaatactaaagaaaattataaggagtttacttagttaaataggttaaataatggaaaatcaagagttacctcc |
11597483 |
T |
|
| Q |
101 |
attgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctccaaatgcaatagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597482 |
attgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctccaaatgcaatagca |
11597383 |
T |
|
| Q |
201 |
ttgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttccacatgctcaatccaagaaacctacaaattaaacatacgtttctatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597382 |
ttgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacctccacatgctcaatccaagaaacctacaaattaaacatacgtttctatt |
11597283 |
T |
|
| Q |
301 |
ataatcactctattatatgacttta |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11597282 |
ataatcactctattatatgacttta |
11597258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 11585406 - 11585078
Alignment:
| Q |
1 |
aaattacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggaaaatcaagagttacctcc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11585406 |
aaatcacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggcaaatcgagagttacctcc |
11585307 |
T |
|
| Q |
101 |
attgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctccaaatgcaatagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585306 |
attgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctccaaatgcaatagca |
11585207 |
T |
|
| Q |
201 |
ttgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttccacatgctcaatccaagaaacctacaaattaaacatacgtttctatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11585206 |
ttgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttctacatgctcaatccaagaaacctaaaaattaaacatacgtttctatt |
11585107 |
T |
|
| Q |
301 |
ataatcactctattatatgactttatttc |
329 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
11585106 |
ataatcagtctattatataactttatttc |
11585078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University