View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12712_low_5 (Length: 336)
Name: NF12712_low_5
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 1542557 - 1542860
Alignment:
| Q |
13 |
gagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatgtg |
112 |
Q |
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| T |
1542557 |
gagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatgtg |
1542656 |
T |
|
| Q |
113 |
ggttttatctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatcttcatgttggtgctgcatagggttttattg |
212 |
Q |
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| T |
1542657 |
ggttttatctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatgttcatgttggtgctgcatagggttttattg |
1542756 |
T |
|
| Q |
213 |
atatatgaagcgcagacacatatacgaac-accatacacaacactgacgccaaatatgagatcgacacctataataatttaagaaaataattgatttgaa |
311 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1542757 |
atatatgaagcacagacacatatacgaacaaccatacacaacactgacgccaaatatgatgtcgacacctataataatttaagaaaataatttatttgaa |
1542856 |
T |
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| Q |
312 |
tata |
315 |
Q |
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|||| |
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| T |
1542857 |
tata |
1542860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 32424447 - 32424516
Alignment:
| Q |
13 |
gagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatat |
82 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
32424447 |
gagatgaaattatcgatggttatatcaaaacattcgtggaggttatcggaaagtaataaccataatatat |
32424516 |
T |
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