View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12712_low_6 (Length: 316)

Name: NF12712_low_6
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12712_low_6
NF12712_low_6
[»] chr4 (1 HSPs)
chr4 (1-298)||(45284518-45284815)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 45284518 - 45284815
Alignment:
Q  1 gaatcaatgatgaaagagatggctgatcttagattagaaactgtaaaagttcgggaccaactttcacatgttttgagtgaattgaaggccacacaaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45284518 gaatcaatgatgaaagagatggctgatcttagattagaaactgtaaaagttcgggaccaactttcacatgttttgagtgaattgaagtccacacaaagag 45284617  T
Q  101 agcttctgaacaaagatactgatatttttgctgctagagattcagaattgaatgctgtcactaaggcggaacagttggaaaatgagttgaagatggaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284618 agcttctgaacaaagatactgatatttttgctgctagagattcagaattgaatgctgtcactaaggcggaacagttggaaaatgagttgaagatggaaaa 45284717  T
Q  201 ggaacagaaagaagaacttctgcatcaagtaaatgagcttaatgaacgtgttcacaggtcaaaacttgctgctattaaagttgagaaacagaatattg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284718 ggaacagaaagaagaacttctgcatcaagtaaatgagcttaatgaacgtgttcacaggtcaaaacttgctgctattaaagttgagaaacagaatattg 45284815  T

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