View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12712_low_9 (Length: 238)
Name: NF12712_low_9
Description: NF12712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12712_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28331363 - 28331147
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331363 |
tttgatattggtgaggctgtttttaacactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
28331264 |
T |
|
| Q |
101 |
aagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtctctttgatccacaaggtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28331263 |
aagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgt |
28331164 |
T |
|
| Q |
201 |
gcatgcaaagatgacca |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
28331163 |
gcatgcaaagatgacca |
28331147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28296822 - 28296606
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||||| |
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| T |
28296822 |
tttgatattggtgaggctgtttttaacactgttcttaattcaatttcaaacactttgttctctattgatttggctgattccaaacctgataaaaagtctc |
28296723 |
T |
|
| Q |
101 |
aagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtctctttgatccacaaggtgt |
200 |
Q |
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|||||||| |||| |||||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28296722 |
aagagtttgagaacattatttggagttacatggaagcagctggtaggcctaatatttcagatttctttccaattcttcgtccttttgatccacaaggtgt |
28296623 |
T |
|
| Q |
201 |
gcatgcaaagatgacca |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
28296622 |
gcatgcaaagatgacca |
28296606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28304707 - 28304493
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
28304707 |
tttgatattggtgatgctgtttttacaactttctttaattcaatttcaaacactttgttctctattgatttggctcatttaacacatgatgaa--gtcta |
28304610 |
T |
|
| Q |
101 |
aagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtctctttgatccacaaggtgt |
200 |
Q |
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|||||||| | || |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28304609 |
aagagtttgaaaacattatttggggtatcatggaaaaagctggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgt |
28304510 |
T |
|
| Q |
201 |
gcatgcaaagatgacca |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
28304509 |
gcatgcaaagatgacca |
28304493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28320884 - 28320665
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccaca---cccgatgaaaagt |
97 |
Q |
| |
|
|||||||||||||| |||||||||| | ||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| || ||||| |||| |
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| T |
28320884 |
tttgatattggtgaagctgtttttacaaatgtccttaattcaatttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagt |
28320785 |
T |
|
| Q |
98 |
ctcaagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtctctttgatccacaagg |
197 |
Q |
| |
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||||||| ||||||| |||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
28320784 |
ctcaagaatttaagaccattatttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaagg |
28320685 |
T |
|
| Q |
198 |
tgtgcatgcaaagatgacca |
217 |
Q |
| |
|
| || |||||| |||||||| |
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| T |
28320684 |
tttgtatgcaaggatgacca |
28320665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28310310 - 28310116
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||| | ||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
28310310 |
tttgatattggtgcggctgtttttacaactatccttaattcaatttcaaacactttgtgttctatggatttggctcattcaacacctgatgaaaagtctc |
28310211 |
T |
|
| Q |
101 |
aagagtttaagaaaattattgggagtttcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtctctttgatccacaa |
195 |
Q |
| |
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|||| |||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28310210 |
aagaatttaagaacgttatgtggggtatcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtccttttgatccacaa |
28310116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 28288391 - 28288503
Alignment:
| Q |
1 |
tttgatattggtgaggctgtttttaatactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| |||| |
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|
| T |
28288391 |
tttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctctatggatttggctcattcaacacctgatgaaaaatctc |
28288490 |
T |
|
| Q |
101 |
aagagtttaagaa |
113 |
Q |
| |
|
||| |||| |||| |
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|
| T |
28288491 |
aagtgtttgagaa |
28288503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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