View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12713_high_2 (Length: 327)
Name: NF12713_high_2
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12713_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 8357852 - 8357536
Alignment:
| Q |
1 |
tttgtaattttgatggaaataaaccaagttctctatatatatctttctttgttggttcattaatcactcttttgcttaacttaacaactcgtgtagttct |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |
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| T |
8357852 |
tttgtaattttgatggaaataaagcaagttctctatagatatctttctttgttggttcattaatcacccttttgcttaacttaacaaatcgtttagttct |
8357753 |
T |
|
| Q |
101 |
tgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357752 |
tgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgc |
8357653 |
T |
|
| Q |
201 |
accttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagagatgttgaacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357652 |
accttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagagatgttgaacaag |
8357553 |
T |
|
| Q |
301 |
aggtagagagtcctttg |
317 |
Q |
| |
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|||||||||||| |||| |
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| T |
8357552 |
aggtagagagtcttttg |
8357536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 28593733 - 28594020
Alignment:
| Q |
1 |
tttgtaattttgatggaaataaaccaagttctctatatatatctttctttgttggttcattaatcactcttttgcttaacttaacaactcgtgtagttct |
100 |
Q |
| |
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|||||| |||||||| |||| || |||| |||||||| ||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
28593733 |
tttgtacttttgatgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaactcgtgtgattct |
28593832 |
T |
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| Q |
101 |
tgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgc |
200 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||| |
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| T |
28593833 |
tgtataagaaattcttgttgagtggattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcatcgaaatagttaactagaagatcatgc |
28593932 |
T |
|
| Q |
201 |
accttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagag |
288 |
Q |
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|||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
28593933 |
accttaaagtttcgtctcatgtttgttatgatttcatgtcggggttcgagcaaagactcggtgagattcaggcatataggaggaagag |
28594020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 53447259 - 53447180
Alignment:
| Q |
129 |
ccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgcaccttaaa |
208 |
Q |
| |
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|||| ||||||| |||| |||||| || ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |
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| T |
53447259 |
ccttgaaggattttgtcgcaacaaagatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaa |
53447180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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