View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12713_high_3 (Length: 319)

Name: NF12713_high_3
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12713_high_3
NF12713_high_3
[»] chr1 (1 HSPs)
chr1 (8-303)||(52577183-52577478)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 52577183 - 52577478
Alignment:
Q  8 gcagaacctgtggcaattaaattaaatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatcagtcacag 107  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52577183 gcagaacttgtggcaattaaattacatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatccgtcacag 52577282  T
Q  108 tctgtagagaataagttgtttacatacgaaaaataaaaccttgtaagataattgtttacatttaaatcatcttcaaacagtactccctnnnnnnnttaat 207  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |       |||||    
T  52577283 tctgtagagaataagttgtttacataccaaaaataaaacctagtaagataattgtttacatttaaatcatcttcaaacagtactccttaaaaaaattaat 52577382  T
Q  208 ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52577383 ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttct 52577478  T

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