View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12713_low_1 (Length: 475)

Name: NF12713_low_1
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12713_low_1
NF12713_low_1
[»] chr1 (4 HSPs)
chr1 (18-464)||(4677810-4678248)
chr1 (18-134)||(15595517-15595631)
chr1 (60-134)||(34466367-34466441)
chr1 (85-130)||(52549098-52549143)
[»] chr7 (18 HSPs)
chr7 (32-134)||(1301956-1302058)
chr7 (19-134)||(8659842-8659957)
chr7 (47-134)||(6790019-6790106)
chr7 (18-133)||(8654928-8655043)
chr7 (18-134)||(8585280-8585396)
chr7 (53-133)||(3147785-3147865)
chr7 (60-134)||(8629052-8629126)
chr7 (60-134)||(13333030-13333104)
chr7 (18-135)||(8667897-8668014)
chr7 (60-133)||(10493949-10494022)
chr7 (30-134)||(8582190-8582294)
chr7 (53-134)||(17268452-17268533)
chr7 (18-134)||(8647355-8647468)
chr7 (24-121)||(8671217-8671314)
chr7 (53-134)||(17260754-17260835)
chr7 (80-133)||(27830450-27830503)
chr7 (62-134)||(8602496-8602568)
chr7 (150-186)||(8671163-8671199)
[»] chr2 (7 HSPs)
chr2 (53-134)||(43625923-43626004)
chr2 (24-134)||(16657091-16657201)
chr2 (18-134)||(16661566-16661682)
chr2 (24-134)||(12235173-12235283)
chr2 (60-133)||(7542746-7542819)
chr2 (62-134)||(12258155-12258227)
chr2 (85-134)||(11999939-11999988)
[»] chr5 (2 HSPs)
chr5 (53-134)||(28220464-28220545)
chr5 (53-122)||(42555530-42555599)
[»] chr8 (1 HSPs)
chr8 (53-134)||(43745360-43745441)
[»] chr4 (3 HSPs)
chr4 (18-135)||(9335464-9335581)
chr4 (60-134)||(30775772-30775846)
chr4 (24-134)||(35132930-35133040)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 4678248 - 4677810
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678248 taacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 4678149  T
Q  118 taacctcttagcatctgcnnnnnnnnnnnnnn-ttaatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagata 216  Q
    ||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4678148 taacctcttagcatctgcaaaaaaaaataaaaattaatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagat- 4678050  T
Q  217 atcaagattttaaataaaggttagcaaccacaactctataatttattttcgttgttgtaatcacatcgcatctacgattgagattgcaacaattgtattt 316  Q
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4678049 --------tttaaataaaggttagcaaccacaagtctataatttattttcgttgttgtaatcacatcgcatctacgattgagattacaacaattgtattt 4677958  T
Q  317 gatagtcattaatgacaatatcaagaatagctacacaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4677957 gatagtcattaatgacaatatcaagaatagctacacaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattt 4677858  T
Q  417 tcattatgataaacaaaacaacnnnnnnnaaaacctctaaatattcat 464  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  4677857 tcattatgataaacaaaacaactttttttaaaacctctaaatattcat 4677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 15595517 - 15595631
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaa-cagaatcactatacctcctaccaa 116  Q
    ||||| ||||||| ||||| |||||| |||||   |||||| |||||||||||||| | || || |||||||||| ||||||||||| || ||||||  |    
T  15595517 taacaataatcatgggtttgtcattcacacca---atgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactga 15595613  T
Q  117 ttaacctcttagcatctg 134  Q
    |||| |||||||||||||    
T  15595614 ttaatctcttagcatctg 15595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 34466441 - 34466367
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||| ||||| || ||| |||||||| ||| ||||||| |  | || ||||||||||||||||||||||    
T  34466441 tgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaacctcttagcatctg 34466367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 52549143 - 52549098
Alignment:
Q  85 ttgaacaacagaatcactatacctcctaccaattaacctcttagca 130  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  52549143 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 52549098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 1301956 - 1302058
Alignment:
Q  32 ggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcat 131  Q
    ||||| |||||| |||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||    
T  1301956 ggtttgtcattcacaccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcat 1302055  T
Q  132 ctg 134  Q
    |||    
T  1302056 ctg 1302058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 8659842 - 8659957
Alignment:
Q  19 aacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaatt 118  Q
    |||| |||||||  |||| || ||| |||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||    
T  8659842 aacattaatcatgagtttgtcgttcacaccagcgataaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaatt 8659941  T
Q  119 aacctcttagcatctg 134  Q
    || ||||| |||||||    
T  8659942 aatctctttgcatctg 8659957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 6790019 - 6790106
Alignment:
Q  47 ccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    ||||| |||||| |||||||||| ||||| || || ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  6790019 ccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagcatctg 6790106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 8654928 - 8655043
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||| ||||||| ||||| |||||  ||||||   | ||| ||||||||||||||||||| || |||||||||| || |||||||||| ||||||||||    
T  8654928 taacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaat 8655027  T
Q  118 taacctcttagcatct 133  Q
    ||||||||||||||||    
T  8655028 taacctcttagcatct 8655043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 8585396 - 8585280
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||| ||||||| ||||| |||||  |||||| ||| ||| |||||||||||||||| || || ||||||||||| | ||||||| || ||||||||||    
T  8585396 taacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaat 8585297  T
Q  118 taacctcttagcatctg 134  Q
    ||||||||| |||||||    
T  8585296 taacctcttggcatctg 8585280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 3147785 - 3147865
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatct 133  Q
    |||||| |||||||||||||||| || || ||||||||||||||||||| | || ||||||||||||||||||| ||||||    
T  3147785 atgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatct 3147865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 8629052 - 8629126
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||| |||||||| || ||||||||||||| ||||||| || ||||||||||||||||||| |||||||    
T  8629052 tgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctcttggcatctg 8629126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 13333104 - 13333030
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||||||||| || || ||||||||||| | ||||||| || |||||||||||||||||||||||||||    
T  13333104 tgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagcatctg 13333030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 8667897 - 8668014
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||| ||||||| ||||| |||||  ||||||  || ||| |||||||||||||||  || ||| |||||||||| |  |||||| || ||||||||||    
T  8667897 taacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaat 8667996  T
Q  118 taacctcttagcatctgc 135  Q
    ||||||||||||||||||    
T  8667997 taacctcttagcatctgc 8668014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 10494022 - 10493949
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatct 133  Q
    |||||||||||||||| || || ||||||||||| | ||||||| || |||| |||||||||||||||||||||    
T  10494022 tgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagcatct 10493949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 8582190 - 8582294
Alignment:
Q  30 tcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagc 129  Q
    ||||||| |||||  |||| ||| ||||| |||| ||||||||| |||| || ||||||||||  |||||||||||  |||| |||||||||||||| ||    
T  8582190 tcggtttgtcattagcacctgcggtgaccttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaacctctttgc 8582289  T
Q  130 atctg 134  Q
    |||||    
T  8582290 atctg 8582294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 17268452 - 17268533
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||| ||||||||||| |||| || |||||||| || |||| ||||||| || ||||||||||||  |||||||||||||    
T  17268452 atgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 17268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 8647355 - 8647468
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||| ||||||| ||||| |||||| | |||   |||||| |||||||||||||| |  | || || |||||||||||||||  | || ||||||| ||    
T  8647355 taacaataatcatgggtttgtcattcacccca---atgaccttgaatggccacaacttcttatcattctgaacaacagaatcaaaaaacttcctaccgat 8647451  T
Q  118 taacctcttagcatctg 134  Q
    |||||||||||||||||    
T  8647452 taacctcttagcatctg 8647468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 8671314 - 8671217
Alignment:
Q  24 taatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaac 121  Q
    ||||||| ||||| |||||  ||||||  || ||| |||||||||||||||  || ||| |||||||||| | ||||||| || ||||||||||||||    
T  8671314 taatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 17260754 - 17260835
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||| ||||||||||| |||| || |||||||| || |||| ||||||| || ||||||||| ||  |||||||||||||    
T  17260754 atgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagcatctg 17260835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 27830503 - 27830450
Alignment:
Q  80 tctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatct 133  Q
    |||||||||||||||  ||| ||  || ||||||||||||||||||||||||||    
T  27830503 tctttttgaacaacatcatcgctgaacttcctaccaattaacctcttagcatct 27830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 8602496 - 8602568
Alignment:
Q  62 aatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    ||||||||||||   ||||| || ||||  ||||||||||||||  |||| |||||||||||||| |||||||    
T  8602496 aatggccacaaccgtatgtcattctgaatgacagaatcactatatttccttccaattaacctctttgcatctg 8602568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 8671199 - 8671163
Alignment:
Q  150 ttaatagtaaattcccatcatccatttatctagctaa 186  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  8671199 ttaatagtaaattcccatcattcatttatccagctaa 8671163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 43625923 - 43626004
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  43625923 atgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctg 43626004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 16657201 - 16657091
Alignment:
Q  24 taatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacct 123  Q
    ||||||| ||||| |||||| | || || |||||| ||||||||||||| ||||| || ||||||||||||| ||||||| || ||||||| ||||||||    
T  16657201 taatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaacct 16657102  T
Q  124 cttagcatctg 134  Q
     ||||||||||    
T  16657101 tttagcatctg 16657091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 16661682 - 16661566
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||||||||| | ||||| |||||  ||||||| || ||| |||| ||||||||||  || |||||||||||||| |  |||||| |  ||||||||||    
T  16661682 taacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaat 16661583  T
Q  118 taacctcttagcatctg 134  Q
    |||||||||||||||||    
T  16661582 taacctcttagcatctg 16661566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 12235173 - 12235283
Alignment:
Q  24 taatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacct 123  Q
    ||||||| ||||| |||||  |||||||   |||| |||||||||||||||| |  || | |||||||||   ||||||| || ||||||||||||||||    
T  12235173 taatcatgggtttgtcattgacaccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacct 12235272  T
Q  124 cttagcatctg 134  Q
    |||||||||||    
T  12235273 cttagcatctg 12235283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 7542746 - 7542819
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatct 133  Q
    |||||||||| ||||  || || | ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  7542746 tgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 12258227 - 12258155
Alignment:
Q  62 aatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||||||| || || | |||||| ||   ||||||| || |||||||||||||||||||||||||||    
T  12258227 aatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 11999939 - 11999988
Alignment:
Q  85 ttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    ||||||||||  ||||||| || ||| |||||||||||||||||||||||    
T  11999939 ttgaacaacaagatcactaaacttccaaccaattaacctcttagcatctg 11999988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 28220464 - 28220545
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||| |||||||||||||| | || || | |||||||||||| |||||| || |||||||||||||||||||||||||||    
T  28220464 atgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctg 28220545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 42555599 - 42555530
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacc 122  Q
    |||||| |||||||||||||| | ||||| |||||||||||| ||||| || || |||||||||||||||    
T  42555599 atgaccttgaatggccacaacttcatgtcattttgaacaacataatcattaaacttcctaccaattaacc 42555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 43745360 - 43745441
Alignment:
Q  53 atgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||| |||| ||||||||| | || || ||||||||| |||||||| || || |||||||||||||||||||||||||||    
T  43745360 atgaccttgaacggccacaacttcatatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagcatctg 43745441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 9335581 - 9335464
Alignment:
Q  18 taacactaatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaat 117  Q
    ||||| ||||||| ||||| |||||  ||||||  || ||| |||||||||||||||  || ||| ||||||||||   ||||||| || |||||||| |    
T  9335581 taacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagt 9335482  T
Q  118 taacctcttagcatctgc 135  Q
    ||| ||||||||||||||    
T  9335481 taatctcttagcatctgc 9335464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 30775772 - 30775846
Alignment:
Q  60 tgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 134  Q
    |||||||||||||||  || ||||||||||||||||  || ||| |  |||||||||||||||| ||||||||||    
T  30775772 tgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagcatctg 30775846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 35132930 - 35133040
Alignment:
Q  24 taatcatcggtttatcattctcaccagcgatgaccctgaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacct 123  Q
    ||||||| ||||| |||||  |||| ||  ||||| |||||||||| | ||  || || | |||||||| || ||||||| || ||||||||||||||||    
T  35132930 taatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaacct 35133029  T
Q  124 cttagcatctg 134  Q
     ||||||||||    
T  35133030 tttagcatctg 35133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University