View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12713_low_4 (Length: 257)
Name: NF12713_low_4
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12713_low_4 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 29995 - 30219
Alignment:
| Q |
10 |
agtagcataggtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttcttttcacttgaagacctaatgtcttaattacct |
109 |
Q |
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| T |
29995 |
agtaacataagtccaagtcccggctaagtattcacgagaaaggcgttgcaaactttctgaccttt-----tcacttgaagacctaatgtcttaattacct |
30089 |
T |
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| Q |
110 |
cttgtatttcctcttttggtacttgcatgcaagtttctgcatttggacataacttaaaaaagtttgctaaaactttttctgcctgcattttgcaaaataa |
209 |
Q |
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| T |
30090 |
cttgtatttccacttttggtacttgcatgcaagtttcagcgtttggacataacttaaaaaagtttgctaaaactttttctgcctgcattttgcaaaataa |
30189 |
T |
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| Q |
210 |
gaagctaactcaaaatagggtatacaaaag |
239 |
Q |
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| T |
30190 |
gaagctaactcaaaatagggtatacaaaag |
30219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 105004 - 104780
Alignment:
| Q |
10 |
agtagcataggtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttcttttcacttgaagacctaatgtcttaattacct |
109 |
Q |
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| T |
105004 |
agtaacataggtccaagtctcagttaagtattcacgagaaaagcgttgcaaacttcttgac-----cttttcacttgaaaacctaatgtctttattacct |
104910 |
T |
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| Q |
110 |
cttgtatttcctcttttggtacttgcatgcaagtttctgcatttggacataacttaaaaaagtttgctaaaactttttctgcctgcattttgcaaaataa |
209 |
Q |
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| T |
104909 |
cttctatttcctctctttttacttgcatacaagtttctgcgtctggacataactcgaaaaagttatctaaaacttgttttgtctgcattttgcaaaataa |
104810 |
T |
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| Q |
210 |
gaagctaactcaaaatagggtatacaaaag |
239 |
Q |
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| T |
104809 |
gaagctaactcaaaataggatatacaaaag |
104780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 14200455 - 14200231
Alignment:
| Q |
10 |
agtagcataggtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttcttttcacttgaagacctaatgtcttaattacct |
109 |
Q |
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| T |
14200455 |
agtaacataggtccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgac-----cttttcacttgaagacctaatgtccttattacct |
14200361 |
T |
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| Q |
110 |
cttgtatttcctcttttggtacttgcatgcaagtttctgcatttggacataacttaaaaaagtttgctaaaactttttctgcctgcattttgcaaaataa |
209 |
Q |
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| T |
14200360 |
cttctatttcctccattgttacttgcatacaagtttctacgtctggacataacttgaaaaagttatctaaaacttgttttaccaacattttgcaaaacaa |
14200261 |
T |
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| Q |
210 |
gaagctaactcaaaatagggtatacaaaag |
239 |
Q |
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| T |
14200260 |
gaagctatctcaaaataggatatacaaaag |
14200231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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