View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12713_low_6 (Length: 241)
Name: NF12713_low_6
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12713_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8357879 - 8358102
Alignment:
| Q |
1 |
atgcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357879 |
atgcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgttt |
8357978 |
T |
|
| Q |
101 |
gcaagaaagttggaggaattgctcttattacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357979 |
gcaagaaagttggaggaattgctcttgttacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgc |
8358078 |
T |
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| Q |
201 |
accaagtattgtaggtggtttagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
8358079 |
accaagtattgtaggtggtttagt |
8358102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28593706 - 28593486
Alignment:
| Q |
1 |
atgcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgttt |
100 |
Q |
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||||||||| || | |||| |||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||| |||| |
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| T |
28593706 |
atgcaattcgataatattcacaataggtacattgaacttcttcatagactaacatcaaagagaaagaaaattcaaagaagattagcattgattagggttt |
28593607 |
T |
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| Q |
101 |
gcaagaaagttggaggaattgctcttattacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
28593606 |
gcaagaaagttggaggaattgctcttgttacatcacatggtgccattcttattgctttattagtggtttcttttcatagtgtagtagggttagtggctgc |
28593507 |
T |
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| Q |
201 |
accaagtattgtaggtggttt |
221 |
Q |
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|||||||||||||||| |||| |
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| T |
28593506 |
accaagtattgtaggtagttt |
28593486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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