View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12713_low_7 (Length: 210)

Name: NF12713_low_7
Description: NF12713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12713_low_7
NF12713_low_7
[»] scaffold0177 (8 HSPs)
scaffold0177 (20-210)||(21679-21868)
scaffold0177 (3-210)||(21830-22037)
scaffold0177 (20-171)||(22016-22167)
scaffold0177 (71-210)||(22811-22949)
scaffold0177 (3-104)||(22911-23012)
scaffold0177 (20-80)||(21492-21552)
scaffold0177 (139-210)||(21442-21513)
scaffold0177 (140-210)||(21630-21700)
[»] chr6 (4 HSPs)
chr6 (3-153)||(27901579-27901729)
chr6 (112-210)||(19284438-19284536)
chr6 (123-202)||(27901531-27901609)
chr6 (20-89)||(19284515-19284584)
[»] chr7 (5 HSPs)
chr7 (20-153)||(40589716-40589849)
chr7 (112-210)||(40589639-40589737)
chr7 (74-143)||(43181223-43181292)
chr7 (74-143)||(43181292-43181361)
chr7 (83-143)||(43181361-43181421)
[»] chr2 (4 HSPs)
chr2 (8-204)||(33866365-33866561)
chr2 (8-210)||(33866191-33866393)
chr2 (8-171)||(33866061-33866225)
chr2 (64-210)||(33866527-33866672)
[»] scaffold1425 (3 HSPs)
scaffold1425 (31-143)||(1720-1832)
scaffold1425 (20-98)||(1-79)
scaffold1425 (134-210)||(58-134)
[»] chr3 (2 HSPs)
chr3 (5-100)||(2941103-2941198)
chr3 (113-210)||(2941043-2941139)
[»] chr8 (5 HSPs)
chr8 (50-158)||(24632610-24632719)
chr8 (67-131)||(24632115-24632179)
chr8 (7-100)||(22651346-22651439)
chr8 (50-116)||(24632278-24632345)
chr8 (50-196)||(24631914-24632065)
[»] scaffold0320 (2 HSPs)
scaffold0320 (82-210)||(58-199)
scaffold0320 (20-98)||(1-79)
[»] chr1 (2 HSPs)
chr1 (67-132)||(33036756-33036821)
chr1 (67-132)||(33036848-33036913)
[»] scaffold0585 (1 HSPs)
scaffold0585 (116-204)||(1590-1678)
[»] chr4 (3 HSPs)
chr4 (104-151)||(15983840-15983887)
chr4 (104-151)||(15983907-15983954)
chr4 (104-151)||(15983974-15984021)
[»] scaffold0036 (3 HSPs)
scaffold0036 (146-204)||(93247-93305)
scaffold0036 (146-204)||(93306-93364)
scaffold0036 (146-179)||(93213-93246)


Alignment Details
Target: scaffold0177 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 21679 - 21868
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaa 119  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21679 taaattttggtcaccaaaggttcctccttgggagacgaacttaatttaaactttattttagggaagtaacttcttaattaggtccataatcatcataaaa 21778  T
Q  120 ttagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||| ||| || || ||||||||||| |||| |||||    
T  21779 ttagtattacaaaactagaatgaactatattaggcatttggcaagaatccaagccaaagaaggtagga-taaattttggtcaccaaaggtt 21868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 21830 - 22037
Alignment:
Q  3 agccaaaaaaggtaggataaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggt 102  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  21830 agccaaagaaggtaggataaattttggtcaccaaaggttcctcctttcgagacgaacttaatttaaactttattttagggaagtaacttcttaatttggt 21929  T
Q  103 ccataatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttac 202  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||| ||||||||||||| ||| ||| ||||| | | ||||||||||||| ||    
T  21930 ccataatcatcataaaagtagtattacattactagaatgaattatattaggcatttggcaagaattcaagccataaaagttcatattaaattttggtcac 22029  T
Q  203 cacaggtt 210  Q
    || |||||    
T  22030 caaaggtt 22037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 22016 - 22167
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaa 119  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  22016 taaattttggtcaccaaaggttcctccttgggagacaaacttaatttaaattttattttaaggaagtaacttgttaattaggttcataatcatcataaaa 22115  T
Q  120 ttagtattacatatctagaatgaactatattaggaatttggcaagaatccaa 171  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22116 ttagtattacataactagaatgaactatattaggcatttggcaagaatccaa 22167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 22811 - 22949
Alignment:
Q  71 tttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatcca 170  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  22811 tttattttagggaagtaacttgttaattatgtccataatcatcataaaattagtattacataactagaatgaactatattaggcatttgacaagaatcca 22910  T
Q  171 aaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    | ||||||||| || || ||||||||||| |||| |||||    
T  22911 agccaaaaaaggtagga-taaattttggtcaccaaaggtt 22949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 22911 - 23012
Alignment:
Q  3 agccaaaaaaggtaggataaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggt 102  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||| ||||| || || ||| |||||||||||||    
T  22911 agccaaaaaaggtaggataaattttggtcaccaaaggttccttcttgggagacgaacttaatttaaacttaattttcggaaattaagttgttaattaggt 23010  T
Q  103 cc 104  Q
    ||    
T  23011 cc 23012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 21492 - 21552
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttag 80  Q
    |||||||| ||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  21492 taaatttttgtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttag 21552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 21442 - 21513
Alignment:
Q  139 atgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    ||||||||||||||| ||||||||||||||||| | ||||||| |  ||||||||||| || |||| |||||    
T  21442 atgaactatattaggtatttggcaagaatccaagcaaaaaaagttcggattaaatttttgtcaccaaaggtt 21513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 21630 - 21700
Alignment:
Q  140 tgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    |||||||||||||| ||||||||||||| ||| ||| | ||| |  |||||||||||||| |||| |||||    
T  21630 tgaactatattaggcatttggcaagaattcaagccatacaagttcggattaaattttggtcaccaaaggtt 21700  T

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Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 27901579 - 27901729
Alignment:
Q  3 agccaaaaaaggtaggataaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggt 102  Q
    |||||||||||||||||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27901579 agccaaaaaaggtaggataaattttggttacgaaaggttcctcctttggagacgaacttaatttaaactttattttagggatgtaacttgttaattaggt 27901678  T
Q  103 ccataatcatcataaaattagtattacatatctagaatgaactatattagg 153  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  27901679 ccataatcatcataaaattagtattaaataactagaatgaactatattagg 27901729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 19284438 - 19284536
Alignment:
Q  112 tcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    |||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||  |||||||| ||||| |||| |||||    
T  19284438 tcataaaaatagtattacataactagaatgaactataatcggaatttggcaagaatccaaaccaaaaaatatcggattaaatgttggtcaccaaaggtt 19284536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 27901531 - 27901609
Alignment:
Q  123 gtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttac 202  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||    
T  27901531 gtattacataactagaatgaactatattaggaatttggcaagaatccaagccaaaaaaggtagga-taaattttggttac 27901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19284515 - 19284584
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaac 89  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19284515 taaatgttggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaac 19284584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 40589716 - 40589849
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaa 119  Q
    |||||||||||||||||||  ||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40589716 taaattttggtcaccaaaggttcctcatttggagacgtacttaatttaaactttatattagggaagtaacttgttaattaggtccataatcatcataaaa 40589815  T
Q  120 ttagtattacatatctagaatgaactatattagg 153  Q
    ||||||||||||| ||||||||||||||||||||    
T  40589816 ttagtattacataactagaatgaactatattagg 40589849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 40589639 - 40589737
Alignment:
Q  112 tcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||| |||| |||||    
T  40589639 tcataaaattagtattacataactaaaatgaactatattaggcatttggcaagaatccaaaccaaaaaagttcggattaaattttggtcaccaaaggtt 40589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 43181292 - 43181223
Alignment:
Q  74 attttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 143  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181292 attttagggaagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 43181361 - 43181292
Alignment:
Q  74 attttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 143  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181361 attttagggaagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 43181421 - 43181361
Alignment:
Q  83 aagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 143  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181421 aagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 33866561 - 33866365
Alignment:
Q  8 aaaaaggtaggataaa-ttttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccat 106  Q
    |||||||||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  33866561 aaaaaggtaggataaaattttggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttaggaaagaaacttgttaattaggtccat 33866462  T
Q  107 aatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttacca 204  Q
    |||||||||| ||| |||||||||||  ||||||||||||||  ||  |||| |||||||||||| || |||||| || ||| |||||||||| ||||    
T  33866461 aatcatcatacaatgagtattacataaatagaatgaactatagcagacatttagcaagaatccaagcc-aaaaaggtaggataaaattttggtcacca 33866365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 33866393 - 33866191
Alignment:
Q  8 aaaaaggtaggataaa-ttttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccat 106  Q
    |||||||||||||||| |||||||||||| |   |||||||| ||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||    
T  33866393 aaaaaggtaggataaaattttggtcaccagaagttcctcctttggagacgaacttaatttaaaaattattttagggaagaaacttgttatttaggtccat 33866294  T
Q  107 aatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccaca 206  Q
    |||||||||| |||||||||||||||  ||||||||||||||  | | ||||||||||||| |||| | |||||| || ||| |||||||||| |||| |    
T  33866293 aatcatcatagaattagtattacataaatagaatgaactatagcaagcatttggcaagaat-caaagccaaaaagttaggataaaattttggtcaccaaa 33866195  T
Q  207 ggtt 210  Q
    ||||    
T  33866194 ggtt 33866191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 33866225 - 33866061
Alignment:
Q  8 aaaaaggtaggataaa-ttttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccat 106  Q
    |||||| ||||||||| |||||||||||||||  |||||||| |||||||||||||||||  |||||||||||| |||  |||||||||||| |||||||    
T  33866225 aaaaagttaggataaaattttggtcaccaaaggttcctcctttggagacgaacttaatttgtactttattttagagaaaaaacttgttaattgggtccat 33866126  T
Q  107 aatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaa 171  Q
    |||||||| | ||| |||||||||||  ||||||||||||||  ||  ||||| |||||||||||    
T  33866125 aatcatcaaacaatgagtattacataaatagaatgaactatagcagacatttgacaagaatccaa 33866061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 33866672 - 33866527
Alignment:
Q  64 tttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactatattaggaatttggcaa 163  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||  ||  |||||| ||    
T  33866672 tttaaactttattttagggaagaaacttgttaattaggtccataatcatcatacaatgagtattacataaatagaatgaactatagcagacatttggaaa 33866573  T
Q  164 gaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    ||||| || || |||||| || ||| |||||||||| |||| |||||    
T  33866572 gaatcgaagcc-aaaaaggtaggataaaattttggtcaccaaaggtt 33866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 1832 - 1720
Alignment:
Q  31 caccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattaca 130  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |    
T  1832 caccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaactggttaattaggtcgataatcatcataacattagtattaaa 1733  T
Q  131 tatctagaatgaa 143  Q
    || ||||||||||    
T  1732 taactagaatgaa 1720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 79 - 1
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaatt 98  Q
    |||||||||||||||||||  |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  79 taaattttggtcaccaaaggttcctcctatggagacgaactcaatttaaactttattttagggaagtaacttgttaatt 1  T

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Target: scaffold1425; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 134 - 58
Alignment:
Q  134 ctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||| |  |||||||||||||| |||| |||||    
T  134 ctagaatgaactatattaggcattaggcaagaatccaaaccaaaaaagttcggattaaattttggtcaccaaaggtt 58  T

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Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 2941103 - 2941198
Alignment:
Q  5 ccaaaaaaggtaggataaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattag 100  Q
    ||||||||||||||||||||||||||||||||||  |||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2941103 ccaaaaaaggtaggataaattttggtcaccaaaggttcctccattggaaacgaacttaatttaaactttattttagggaagtaacttcttaattag 2941198  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 2941043 - 2941139
Alignment:
Q  113 cataaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    |||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||| ||||||||| || || ||||||||||| |||| |||||    
T  2941043 cataaaattagtattacataaccagaatgaactatattaggcatttggtaagaatccaatccaaaaaaggtagga-taaattttggtcaccaaaggtt 2941139  T

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Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 24632610 - 24632719
Alignment:
Q  50 ggagacgaacttaatttaaa-ctttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactata 148  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   || |||||||||||    
T  24632610 ggagacgaactcaatttaaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaatgagtattacatcaatataatgaactata 24632709  T
Q  149 ttaggaattt 158  Q
     |||| ||||    
T  24632710 gtaggcattt 24632719  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 24632115 - 24632179
Alignment:
Q  67 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24632115 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaataagtattacat 24632179  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 22651346 - 22651439
Alignment:
Q  7 aaaaaaggtaggataaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaattag 100  Q
    ||||||||| || |||| ||||| || |||||  |||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  22651346 aaaaaaggttggttaaagtttggacaacaaagattcctcctttgcagacgaacttagtttaaactttattttaggaaagtaacttgttaattag 22651439  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 24632278 - 24632345
Alignment:
Q  50 ggagacgaacttaatttaa-actttattttagggaagtaacttgttaattaggtccataatcatcata 116  Q
    ||||||||||| ||||||  |||| |||||||||||||||| ||||||||| ||||||||| ||||||    
T  24632278 ggagacgaactcaatttagtacttaattttagggaagtaacatgttaattaagtccataatgatcata 24632345  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 24631914 - 24632065
Alignment:
Q  50 ggagacgaacttaatttaaa-ctttattttagggaagtaacttgttaattaggtccataa----tcatcataaaattagtattacatatctagaatgaac 144  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||| ||||| ||    |||| ||||||  | ||||||||   ||||||||||    
T  24631914 ggagaagaactcaatttaaaactttatttaagggaagtaacttcttaattatgtccagaatcattcattataaaacgattattacatcagtagaatgaac 24632013  T
Q  145 tatattaggaatttggcaagaatccaaaccaaaaaagataagattaaatttt 196  Q
    |||| ||   ||||  |||| |||||| ||||||||| |||||| |||||||    
T  24632014 tataataaacattttccaagtatccaagccaaaaaaggtaagataaaatttt 24632065  T

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Target: scaffold0320 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 199 - 58
Alignment:
Q  82 gaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaac-------------tatattaggaatttggcaagaatc 168  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |             ||||||||| ||||||||||||||    
T  199 gaagtaacttgttaaataggtccataatcatcataaaattagtattacataactagaatgatctatattaggcatttatattaggcatttggcaagaatc 100  T
Q  169 caaaccaaaaaagataagattaaattttggttaccacaggtt 210  Q
    ||||||||||||| |  |||||||||||||| |||| |||||    
T  99 caaaccaaaaaagttcggattaaattttggtcaccaaaggtt 58  T

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Target: scaffold0320; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 79 - 1
Alignment:
Q  20 taaattttggtcaccaaagcatcctccttgggagacgaacttaatttaaactttattttagggaagtaacttgttaatt 98  Q
    |||||||||||||||||||  |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  79 taaattttggtcaccaaaggttccttctttggagacgaacttaatttaaaccttattttagggaagtaacttgttaatt 1  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 33036821 - 33036756
Alignment:
Q  67 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacata 132  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  33036821 aaactttattttagggaagtaacttgttaatttggtctataatcatcataaaataagtattacata 33036756  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 33036913 - 33036848
Alignment:
Q  67 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacata 132  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  33036913 aaactttattttagggaagtaacttgttaatttggtctataatcatcataaaataagtattacata 33036848  T

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Target: scaffold0585 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 1590 - 1678
Alignment:
Q  116 aaaattagtattacatatctagaatgaactatattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttacca 204  Q
    ||||||||||||| ||| |||||||||||||||||||| ||| |||||||||| |||||||||||| |  |||||||||||||| ||||    
T  1590 aaaattagtattaaataactagaatgaactatattaggcattaggcaagaatctaaaccaaaaaagtttggattaaattttggtcacca 1678  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 15983887 - 15983840
Alignment:
Q  104 cataatcatcataaaattagtattacatatctagaatgaactatatta 151  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15983887 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 15983954 - 15983907
Alignment:
Q  104 cataatcatcataaaattagtattacatatctagaatgaactatatta 151  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15983954 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 15984021 - 15983974
Alignment:
Q  104 cataatcatcataaaattagtattacatatctagaatgaactatatta 151  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15984021 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 93305 - 93247
Alignment:
Q  146 atattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttacca 204  Q
    |||||||||||||| ||||||||||||||||||||| |  |||||||||||||| ||||    
T  93305 atattaggaatttgacaagaatccaaaccaaaaaagtttggattaaattttggtcacca 93247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 93364 - 93306
Alignment:
Q  146 atattaggaatttggcaagaatccaaaccaaaaaagataagattaaattttggttacca 204  Q
    |||||||||||||| ||||||||||||||||||||| |  |||||||||||||| ||||    
T  93364 atattaggaatttgacaagaatccaaaccaaaaaagtttggattaaattttggtcacca 93306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 93246 - 93213
Alignment:
Q  146 atattaggaatttggcaagaatccaaaccaaaaa 179  Q
    |||||||||||||| |||||||||||||||||||    
T  93246 atattaggaatttgacaagaatccaaaccaaaaa 93213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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