View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_high_11 (Length: 245)
Name: NF12714_high_11
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 32032345 - 32032130
Alignment:
| Q |
19 |
agggacaaatccaagattagttttttggtgcagctaaattaacagtataaaaaatatgtccaattaaattacagactatgcattatttcaccaaaaataa |
118 |
Q |
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| T |
32032345 |
agggacaaatccaagattagttttttggtgcagctaaattaacggtataaaaaatatgtccaattaaattacagactatgtattatttcaccaaaaataa |
32032246 |
T |
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| Q |
119 |
caattttagtagatttattttggccaattatatcagcccaagtccatttctaatccaaacaattgctaatatgaacgaaatgaacaatcaacctcctcta |
218 |
Q |
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| T |
32032245 |
caattttagtagatttatttcggccaattatatcagcccaagtccatttctaatccaaacaattgctaatatgaacgaaatgaacaatcaacctcctcta |
32032146 |
T |
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| Q |
219 |
acatttcatttttctt |
234 |
Q |
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|||||||||||||||| |
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| T |
32032145 |
acatttcatttttctt |
32032130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 11476420 - 11476489
Alignment:
| Q |
69 |
aaaatatgtccaattaaattacagactatgcattatttcaccaaaaataacaattttagtagatttattt |
138 |
Q |
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| T |
11476420 |
aaaatttgcccaatgaaattaaagaatatgcactatttcacaaagaataacaattttagtagttttattt |
11476489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 33190137 - 33190089
Alignment:
| Q |
176 |
aacaattgctaatatgaacgaaatgaacaatcaacctcctctaacattt |
224 |
Q |
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|||||||| |||| ||||| |||||||| |||||||||||||||||||| |
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| T |
33190137 |
aacaattgttaatttgaacaaaatgaaccatcaacctcctctaacattt |
33190089 |
T |
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