View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_high_2 (Length: 543)
Name: NF12714_high_2
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 32 - 525
Target Start/End: Original strand, 14960197 - 14960693
Alignment:
| Q |
32 |
catctgttactgttgttgtttgcagatacagtggttattgtatcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttc |
131 |
Q |
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| T |
14960197 |
catctgttactgttgttgtttgcagatacagtggttattgtttcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttc |
14960296 |
T |
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| Q |
132 |
tgagagcaatcaattcatggtt--------cccaatcatgagtactgcagttggctaactaacttacttatggacatatttacttggtaacactatttga |
223 |
Q |
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| T |
14960297 |
tgagagcaatcaattcatggttgaatggttcccaatcatgagtactgcagttggctaa----cttacttatggacatatttacttggtaacactatttga |
14960392 |
T |
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| Q |
224 |
agtttcttttttatgtaccatgaaaatgaacatgacctttgcttcttcactcatttgattagtcggtttgcaatactgtccatatcttttcgtagagttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
14960393 |
agtttcttttttatgtaccatgaaaatgaacatgacctttgcttcttcacacatttgattagtcggtttgcaatactgtccatatcttttcgcagagctg |
14960492 |
T |
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| Q |
324 |
acactttagattgaaggcgtatccggtgtccaatgtgttggtgtcaggcaccaatatgacatcagtacatgtgctgacgtgtctaagatgtgctaatgtc |
423 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
14960493 |
acactttagattgaaggtgtatccggtgtccaatgtgttggtgtcaggcaccaatacgacaccagtacatgtgctgacgtgtctaagatgtgctaatatc |
14960592 |
T |
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| Q |
424 |
agacaccaacatgttacatgtgttgacatctacgtgttagtgtcgtgtatgatattcgtgtcatacgtgaatgagtttcagtcacatctatagggataag |
523 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960593 |
agacactaacatgttacatgtgttgacatctacgtgttagtatcgtgtatgatatt-gtgtcatacgtgaatgagtttcagtcacatctatagggataag |
14960691 |
T |
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