View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_high_5 (Length: 301)
Name: NF12714_high_5
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 43412743 - 43413006
Alignment:
| Q |
12 |
agagaagtgctttgtagaatgaatactggccatcatgtccaagtccatgatgatataccttctttctttgtttcttcacaagagtactgtggaaatgaac |
111 |
Q |
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| T |
43412743 |
agagaagtgctttgtagaatgaatactggccatcatgtccaagtccatgatgatataccttctttctttgtttcttcacaagagtactgtggaaatgaac |
43412842 |
T |
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| Q |
112 |
tgaaagtgaaagtgatggttttgtttggttgaggcttgtggcagtgaatgaatgaatggtaatgaatgagaaaaggtttatgagtctgaatgaactcaac |
211 |
Q |
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| T |
43412843 |
tgaaagtgaaagtgatggttttgtttggttgaggcttgtggcagtgaatg----------aatgaatgagaaaaggtttatgagtctgaatgaactcaac |
43412932 |
T |
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| Q |
212 |
aactccaaaaaagacgactttgcttgtccatcattagtcaagtcatcaccattcaccaatggctttgtggcaat |
285 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43412933 |
aactccaaaagagacgactttgcttgtccatcattagtcaagtcatcaccattcaccaatggctttgtggcaat |
43413006 |
T |
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