View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12714_high_8 (Length: 257)
Name: NF12714_high_8
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_high_8 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 27507580 - 27507341
Alignment:
| Q |
18 |
caaaggctccagtatgacaattgttcaatatagaatcgtaagacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507580 |
caaaggctccagtatgacaattgttcaatatagaatcgtaagacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaac |
27507481 |
T |
|
| Q |
118 |
atttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507480 |
atttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaa |
27507381 |
T |
|
| Q |
218 |
ataacgcttaaaaggcgttatcaaagtcgcatgaatagca |
257 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
27507380 |
ataactcttaataggcgttatcaaagtcgcatgagtagca |
27507341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 27484577 - 27484775
Alignment:
| Q |
58 |
agacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaacatttcactacaagtgcactctaacaatattttaatttcac |
157 |
Q |
| |
|
||||| ||||| |||||||| | | |||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
27484577 |
agacgatcattgaatgaaaa-attaatttctcttttgaaaagaaactgtccaatgttaacatttcactacaaatgcaatctaacaacattttaatttcag |
27484675 |
T |
|
| Q |
158 |
tctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaaataacgcttaaaaggcgttatcaaagtcgcatgaatagca |
257 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||| |||||||| ||||||||| |||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
27484676 |
tctgttaatgcctaaaaaagttataattgtttgggtcatctgatctgcatgttgctccaaataatgcttcaaaggcattatccaagtcgcatgaatagca |
27484775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 86 - 255
Target Start/End: Complemental strand, 27502500 - 27502331
Alignment:
| Q |
86 |
tctctcttgaaaagaaattgtccaatgttaacatttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatc |
185 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
27502500 |
tctctcttgaaaagaaattgtctaatgttaagatttcactacaagtgctctctaacaaaattttaatttcagtctgttaatgcctaaaatagttataatc |
27502401 |
T |
|
| Q |
186 |
gtctggatcatctgatgtgcatgttattccaaataacgcttaaaaggcgttatcaaagtcgcatgaatag |
255 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||||||| ||| ||||| | ||||||| |||| ||||||| |
|
|
| T |
27502400 |
gtctgggtcatctgatctgcatgttgctccaaataacacttcaaaggtgatatcaaaatcgcttgaatag |
27502331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University