View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12714_low_1 (Length: 594)

Name: NF12714_low_1
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12714_low_1
NF12714_low_1
[»] chr4 (9 HSPs)
chr4 (19-578)||(13463515-13464076)
chr4 (82-213)||(38062791-38062922)
chr4 (82-194)||(50535175-50535287)
chr4 (82-195)||(40863441-40863554)
chr4 (82-215)||(41234820-41234953)
chr4 (373-526)||(41233800-41233953)
chr4 (82-130)||(41233787-41233835)
chr4 (139-180)||(17054991-17055032)
chr4 (161-213)||(1055187-1055239)
[»] chr1 (4 HSPs)
chr1 (206-537)||(17643692-17644024)
chr1 (83-194)||(17644242-17644353)
chr1 (95-207)||(7549504-7549616)
chr1 (109-184)||(33980163-33980238)
[»] chr5 (8 HSPs)
chr5 (82-213)||(9268315-9268446)
chr5 (82-195)||(3981414-3981527)
chr5 (82-215)||(41962060-41962193)
chr5 (373-526)||(41961016-41961169)
chr5 (112-213)||(538790-538891)
chr5 (109-152)||(7493375-7493418)
chr5 (109-152)||(24544055-24544098)
chr5 (492-542)||(539737-539787)
[»] chr7 (8 HSPs)
chr7 (81-213)||(4305054-4305186)
chr7 (82-213)||(6733363-6733495)
chr7 (82-213)||(8951580-8951710)
chr7 (83-141)||(30832363-30832421)
chr7 (95-146)||(37698148-37698199)
chr7 (141-180)||(21340324-21340363)
chr7 (139-180)||(45631817-45631858)
chr7 (81-125)||(24361762-24361806)
[»] chr3 (8 HSPs)
chr3 (81-213)||(36740848-36740980)
chr3 (98-208)||(54174608-54174718)
chr3 (82-191)||(52177643-52177752)
chr3 (83-185)||(45695870-45695972)
chr3 (412-537)||(54173510-54173633)
chr3 (82-152)||(9464719-9464789)
chr3 (82-133)||(52176339-52176390)
chr3 (81-125)||(53466121-53466165)
[»] chr2 (5 HSPs)
chr2 (82-195)||(21996845-21996958)
chr2 (109-184)||(5775875-5775950)
chr2 (82-152)||(9440426-9440496)
chr2 (109-171)||(12226316-12226378)
chr2 (491-543)||(9440448-9440500)
[»] scaffold0087 (1 HSPs)
scaffold0087 (82-209)||(26520-26647)
[»] chr6 (4 HSPs)
chr6 (112-185)||(18058295-18058368)
chr6 (82-124)||(19078148-19078190)
chr6 (113-195)||(22967649-22967731)
chr6 (113-195)||(23820662-23820744)
[»] chr8 (2 HSPs)
chr8 (112-185)||(42557953-42558026)
chr8 (139-185)||(23693522-23693568)


Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Complemental strand, 13464076 - 13463515
Alignment:
Q  19 cataacatatacatattgtgtgtatctattgtgtatagtgcatgtattatgtatctatgttgtggtggcatttataatacacaagtgaaactttttgtgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13464076 cataacatatacatattgtgtgtatctattgtgtatagtgcatgtattatgcatctatgttgtggtggcatttataatacacaagtgaaactttttgtgt 13463977  T
Q  119 atcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtacttgtctaatgggtttggtgtttgaag 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13463976 atcatacaaaaatgtgtttttcaccattgatataatattaaacaattcaatggccaagattgaagaatgggtacttgtctaatgggtttggtgtttgaag 13463877  T
Q  219 aagggatgagcattattttgacatattaaacactaaataaataaattaagtagcagcaaggatgaacttaattaaaaactccaaacaatttgt-gat-gg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  13463876 aagggatgagcattattttgacatattaaacactaaataaataaattaagtagcagcaaggatgaacttaattaaaaactccaaacaatttgtcgatcgg 13463777  T
Q  317 tgttaacaatttcagatttcattaattaatgattttcaaggggtaaaactttatgccatcctgcataataatcaaaagattttgtataaccaataatata 416  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  13463776 tgttaacaatttcatatttcgttaattaatgattttcaaggggtaaaactttatgccatcctgcataataatcaaaagattttggataatcaataatata 13463677  T
Q  417 atattaaaaagattatgggtgaaaagttaattgtatacttaccgctgcaactgtctatcatagataacaattgctttgtgtatgatacacaaaaagtata 516  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13463676 atattaaaaagattatgggtgaaaagttaattgtatacttactgttgcaactgtctatcataagtaacaattgctttgtgtatgatacacaaaaagtata 13463577  T
Q  517 acttgtgtatcttaaacgtcatcctatgttgtatgtatattgtatgtatcttctttgtatac 578  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13463576 acttgtgtatcttaaacgtcaccctatgttgtatgtatattgtatgtatcttctttgtatac 13463515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 38062791 - 38062922
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||| ||||||| |||| ||||| |||||||||    
T  38062791 ggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattga 38062890  T
Q  182 agaatgggtacttgtctaatgggtttggtgtt 213  Q
    ||||||| ||||||| ||||| || |||||||    
T  38062891 agaatggttacttgtttaatgagtctggtgtt 38062922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 50535175 - 50535287
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||| |||||| |||||| |||||||| ||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  50535175 ggtgacatttagaatacataagtgaaattttttgtatatcatacccaaatttgcttttcaccattgatataatattaaacaattgaatggccaagattga 50535274  T
Q  182 agaatgggtactt 194  Q
    |||||||||||||    
T  50535275 agaatgggtactt 50535287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 40863554 - 40863441
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||| |||||| ||||||||| |||| |||||||||||| ||||| | ||||| |||| |||||||||||||||||||| |||||||||| |||||||||    
T  40863554 ggtgacatttagaatacacaaatgaatctttttgtgtatgatacacagatgtgtttttaaccattgatataatattaaataattcaatggtcaagattga 40863455  T
Q  182 agaatgggtacttg 195  Q
    ||||||||||||||    
T  40863454 agaatgggtacttg 40863441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 41234953 - 41234820
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||||||||||  ||||||||||  |  |||||| ||||||||||||| || | ||||||||||||||||| ||||||| ||||||||||  |||||| |    
T  41234953 ggtggcatttagtatacacaagttcatgtttttgggtatcatacaaaagtgagtttttcaccattgatatattattaaaaaattcaatggctaagattaa 41234854  T
Q  182 agaatgggtacttgtctaatgggtttggtgtttg 215  Q
    |||||| |||||||| || | |||||||||||||    
T  41234853 agaatgagtacttgtttagtaggtttggtgtttg 41234820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 373 - 526
Target Start/End: Complemental strand, 41233953 - 41233800
Alignment:
Q  373 catcctgcataataatcaaaagattttgtataaccaataatataatattaaaaagattatgggtgaaaagttaatt--gtatacttaccgctgcaactgt 470  Q
    |||||| ||||||||||||||| |||||  || ||| |||||||| | |||||||||||||||||||| |||||||  ||||| | |||| || |||||     
T  41233953 catcctacataataatcaaaag-ttttgggtagccagtaatataacactaaaaagattatgggtgaaatgttaattttgtata-tcaccgttgaaactgc 41233856  T
Q  471 ctatcatagataacaattgctttgtgtatgatacacaaaaagtataacttgtgtat 526  Q
    ||| || || ||||||||||||| |||||| |||||||||||||| ||||||||||    
T  41233855 ctaccaaaggtaacaattgctttttgtatggtacacaaaaagtattacttgtgtat 41233800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 41233787 - 41233835
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaa 130  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||||||||    
T  41233787 ggtggcatttagaatacacaagtaatactttttgtgtaccatacaaaaa 41233835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 17054991 - 17055032
Alignment:
Q  139 tcaccattgatataatattaaacaattcaatgggcaagattg 180  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||    
T  17054991 tcaccatagatttaatattaaacaattcaatggtcaagattg 17055032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 1055239 - 1055187
Alignment:
Q  161 caattcaatgggcaagattgaagaatgggtacttgtctaatgggtttggtgtt 213  Q
    |||||||||||  | ||||||||||||||||||||| || |||||||| ||||    
T  1055239 caattcaatggctaggattgaagaatgggtacttgtttagtgggtttgttgtt 1055187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 206 - 537
Target Start/End: Complemental strand, 17644024 - 17643692
Alignment:
Q  206 ttggtgtttgaagaagggatgagcattattttgacatattaaacactaaataaataaattaagtagcagcaaggatgaacttaattaaaaactccaaaca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17644024 ttggtgtttgaagaagggatgagcattattttgacatattaaacactaaataaataaattaagtagcagcaaggatgaacttaattaaaaatttcaaaca 17643925  T
Q  306 atttgt-gat-ggtgttaacaatttcagatttcattaattaatgattttcaaggggtaaaactttatgccatcctgcataataatcaaaagattttgtat 403  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  17643924 atttgtcgatcggtgttaacaatttcagatttcgttaattaatgattttcaaggggtaaaactttatgccatcctgcataataatcaaaagattttagat 17643825  T
Q  404 aaccaataatataatattaaaaagattatgggtgaaaagttaattgtatacttaccgctgcaactgtctatcatagataacaattgctttgtgtatgata 503  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||    
T  17643824 aatcaataatataatattaaaaagattatgggtg-aaagttaattgtatacttaccgttgcaattgcctatcataggtaacaattgctttgtgtatgata 17643726  T
Q  504 cacaaaaagtataacttgtgtatcttaaacgtca 537  Q
    ||||||||||||||||||||||||||||||||||    
T  17643725 cacaaaaagtataacttgtgtatcttaaacgtca 17643692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 17644353 - 17644242
Alignment:
Q  83 gtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaa 182  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17644353 gtggcatttagaatacacaagtcaaactttttgtgtatcatacaaaaatgtgcttttcatcattgatataatattaaacaattcaatggccaagattgaa 17644254  T
Q  183 gaatgggtactt 194  Q
    ||||||||||||    
T  17644253 gaatgggtactt 17644242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 7549616 - 7549504
Alignment:
Q  95 atacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtactt 194  Q
    |||||||||| || |||||||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||||| ||||||| |||||||| |||||    
T  7549616 atacacaagtcaatctttttgtgtatcatacacaaatgtattttttaccattgatatattattaaacaattcaatggccaagattaaagaatggttactt 7549517  T
Q  195 gtctaatgggttt 207  Q
    || || |||||||    
T  7549516 gtatagtgggttt 7549504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 33980238 - 33980163
Alignment:
Q  109 ctttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaaga 184  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||| ||    ||||||||| ||||||| ||||    
T  33980238 ctttttgtgtatcatacaaaagtgaacttttcaccattgatataatagtattttattcaatggtcaagattaaaga 33980163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 9268315 - 9268446
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9268315 ggtggcatttagaatacacaagtgaaattttttgtgtatcatacccaaatttgcttttcaccattgatataatattaaacaattcaatggccaagattga 9268414  T
Q  182 agaatgggtacttgtctaatgggtttggtgtt 213  Q
    |||||| |||||||| || |||||||| ||||    
T  9268415 agaatgagtacttgtttagtgggtttgttgtt 9268446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 3981527 - 3981414
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||| |||||| ||||||||| |||| |||||||||||| ||||| | ||||  |||| ||| |||||||||||||||| |||||||| | |||||||||    
T  3981527 ggtgacatttagaatacacaaatgaatctttttgtgtatgatacacagatgtatttttaaccgttgatataatattaaataattcaattgccaagattga 3981428  T
Q  182 agaatgggtacttg 195  Q
    ||||||||||||||    
T  3981427 agaatgggtacttg 3981414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 41962193 - 41962060
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||||||||||  ||||||||||  |  |||||| |||| |||||||| || | ||||||||||||||||| ||||||| ||||||||||  |||||| |    
T  41962193 ggtggcatttagtatacacaagttcatgtttttgggtattatacaaaagtgagtttttcaccattgatatattattaaaaaattcaatggctaagattaa 41962094  T
Q  182 agaatgggtacttgtctaatgggtttggtgtttg 215  Q
    |||||| |||||||| || | |||||||||||||    
T  41962093 agaatgagtacttgtttagtaggtttggtgtttg 41962060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 373 - 526
Target Start/End: Complemental strand, 41961169 - 41961016
Alignment:
Q  373 catcctgcataataatcaaaagattttgtataaccaataatataatattaaaaagattatgggtgaaaagttaatt--gtatacttaccgctgcaactgt 470  Q
    |||||| ||||||||||||||| |||||  || ||| |||||||| | |||||||||||||||||||| |||||||  ||||| | |||| || |||||     
T  41961169 catcctacataataatcaaaag-ttttgggtagccagtaatataacactaaaaagattatgggtgaaatgttaattttgtata-tcaccgttgaaactgc 41961072  T
Q  471 ctatcatagataacaattgctttgtgtatgatacacaaaaagtataacttgtgtat 526  Q
    ||| || |  ||||||||||||| |||||| |||||||||||||| || |||||||    
T  41961071 ctaccaaaagtaacaattgctttttgtatggtacacaaaaagtattacctgtgtat 41961016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 538790 - 538891
Alignment:
Q  112 tttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtacttgtctaatgggtttggtg 211  Q
    ||||||||| ||||  |||| || ||||||||||||||||||||||||| |||| ||||| | ||||||||||| |||||| | |||| || ||||| ||    
T  538790 tttgtgtataatacttaaatatgattttcaccattgatataatattaaataattgaatggtctagattgaagaaggggtacctctctagtgagtttgttg 538889  T
Q  212 tt 213  Q
    ||    
T  538890 tt 538891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 7493375 - 7493418
Alignment:
Q  109 ctttttgtgtatcatacaaaaatgtgcttttcaccattgatata 152  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||    
T  7493375 ctttttgtgtatcatacaaaagtgaacttttcaccattgatata 7493418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 24544055 - 24544098
Alignment:
Q  109 ctttttgtgtatcatacaaaaatgtgcttttcaccattgatata 152  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||    
T  24544055 ctttttgtgtatcatacaaaagtgaacttttcaccattgatata 24544098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 539737 - 539787
Alignment:
Q  492 ttgtgtatgatacacaaaaagtataacttgtgtatcttaaacgtcatccta 542  Q
    ||||||||||||||||||||  || | ||||||||||||||||||| ||||    
T  539737 ttgtgtatgatacacaaaaacaatgatttgtgtatcttaaacgtcacccta 539787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 4305186 - 4305054
Alignment:
Q  81 tggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattg 180  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||| ||||||| |||| ||||| ||||||||    
T  4305186 tggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattg 4305087  T
Q  181 aagaatgggtacttgtctaatgggtttggtgtt 213  Q
    |||||||| ||||||| ||||| || |||||||    
T  4305086 aagaatggttacttgtttaatgagtctggtgtt 4305054  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 6733495 - 6733363
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||||  ||||||||    
T  6733495 ggtggcatttagaatacacaggtgaaactttttgtgtatcatacaaaaatgtgtttttcatcattgatataatatgaaataattcaatggctaagattga 6733396  T
Q  182 agaatg-ggtacttgtctaatgggtttggtgtt 213  Q
    | |||| | ||||||| ||  ||||||||||||    
T  6733395 aaaatgagttacttgtttatcgggtttggtgtt 6733363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 8951710 - 8951580
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||||||||||  ||||||||||  |  |||||| |||||||| |||| || | ||||||||||||||||||| | ||| |||||||||| ||||||| |    
T  8951710 ggtggcatttaacatacacaagtctatgtttttgggtatcatataaaagtgagtttttcaccattgatataat-taaaaaaattcaatggccaagattaa 8951612  T
Q  182 agaatgggtacttgtctaatgggtttggtgtt 213  Q
    ||||||| ||||||| || |||||||||||||    
T  8951611 agaatggttacttgtatagtgggtttggtgtt 8951580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 30832421 - 30832363
Alignment:
Q  83 gtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttca 141  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||    
T  30832421 gtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaatgagtttttca 30832363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 37698148 - 37698199
Alignment:
Q  95 atacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccatt 146  Q
    ||||||||||||| |||||||||||||||||||||||| | |||| ||||||    
T  37698148 atacacaagtgaagctttttgtgtatcatacaaaaatgagttttttaccatt 37698199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 21340363 - 21340324
Alignment:
Q  141 accattgatataatattaaacaattcaatgggcaagattg 180  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  21340363 accattgatttaatattaaacaattcaatggtcaagattg 21340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 45631858 - 45631817
Alignment:
Q  139 tcaccattgatataatattaaacaattcaatgggcaagattg 180  Q
    ||||||||||| |||||||||||||||||| || ||||||||    
T  45631858 tcaccattgatttaatattaaacaattcaacggccaagattg 45631817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 24361806 - 24361762
Alignment:
Q  81 tggtggcatttataatacacaagtgaaactttttgtgtatcatac 125  Q
    ||||||||||||  ||||||||||||| ||||||||||| |||||    
T  24361806 tggtggcatttaggatacacaagtgaatctttttgtgtaccatac 24361762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 36740980 - 36740848
Alignment:
Q  81 tggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattg 180  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| ||||  | ||||||||||||||||| ||||||| |||| ||||| ||| ||||    
T  36740980 tggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaataagtttttcaccattgatatattattaaataattgaatggccaaaattg 36740881  T
Q  181 aagaatgggtacttgtctaatgggtttggtgtt 213  Q
    |||||||  ||||||| ||||| ||||||||||    
T  36740880 aagaatgattacttgtttaatgagtttggtgtt 36740848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 54174718 - 54174608
Alignment:
Q  98 cacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtacttgtc 197  Q
    |||||||||||||||||||||| |||||||||| ||| |||| | |||||||||| ||||||| ||||||||||  ||||||||||||||| |||||||     
T  54174718 cacaagtgaaactttttgtgtaccatacaaaaaggtgttttttatcattgatatattattaaataattcaatggctaagattgaagaatggatacttgtt 54174619  T
Q  198 taatgggtttg 208  Q
    |||| ||||||    
T  54174618 taataggtttg 54174608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 52177752 - 52177643
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    |||||||||||  ||||||| || || |||||| |||||| |||| ||||||  |||| |||||||||||| |||||||||||||||||| |||||||||    
T  52177752 ggtggcatttaacatacacaggtcaatctttttatgtatcgtacacaaatgtattttttaccattgatatattattaaacaattcaatggccaagattga 52177653  T
Q  182 agaatgggta 191  Q
    ||||||||||    
T  52177652 agaatgggta 52177643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 45695870 - 45695972
Alignment:
Q  83 gtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaa 182  Q
    ||||||||||  |||||||||| ||    ||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45695870 gtggcatttagtatacacaagttaatgaatttgtgtatcatacacaaatatgatttttaccattgatataatattaaacaattcaatggtcaagattgaa 45695969  T
Q  183 gaa 185  Q
    |||    
T  45695970 gaa 45695972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 412 - 537
Target Start/End: Complemental strand, 54173633 - 54173510
Alignment:
Q  412 atataatattaaaaagattatgggtgaaaagttaattgtatacttaccgctgcaactgtctatcatagataacaattgctttgtgtatgatacacaaaaa 511  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| |||||| ||||||||||||    || ||||||||| ||| |||||||||||||| ||    
T  54173633 atataatattaaaaagattctgggtgaaatgttaattatata-ttaccgttgcaactgtctactgcaggtaacaattgttttttgtatgatacacaagaa 54173535  T
Q  512 gtataacttgtgtatcttaaacgtca 537  Q
    |||| |||| |||||| |||||||||    
T  54173534 gtatcactt-tgtatcctaaacgtca 54173510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 9464719 - 9464789
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatata 152  Q
    |||||||||||   ||||||||| |  |||||||||||||||||||||||| | |||||||||||||||||    
T  9464719 ggtggcatttaacctacacaagtaactctttttgtgtatcatacaaaaatgagtttttcaccattgatata 9464789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 52176339 - 52176390
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgt 133  Q
    |||||||||||  |||||||||| || |||||||||||||||||| ||||||    
T  52176339 ggtggcatttagtatacacaagttaatctttttgtgtatcatacacaaatgt 52176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 53466165 - 53466121
Alignment:
Q  81 tggtggcatttataatacacaagtgaaactttttgtgtatcatac 125  Q
    ||||||| |||| ||||||||| |||||||||||||||| |||||    
T  53466165 tggtggcgtttagaatacacaaatgaaactttttgtgtaccatac 53466121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 21996845 - 21996958
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    ||||||||||| |||||||||||||| | |||||||||| ||||| ||||||| |||| |||||| ||||||||||||| |||| ||||| |||||||||    
T  21996845 ggtggcatttagaatacacaagtgaatcattttgtgtatgatacacaaatgtgtttttaaccattaatataatattaaataatttaatggccaagattga 21996944  T
Q  182 agaatgggtacttg 195  Q
    ||||||||||||||    
T  21996945 agaatgggtacttg 21996958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 5775875 - 5775950
Alignment:
Q  109 ctttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaaga 184  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||| ||    ||||||||| ||||||| ||||    
T  5775875 ctttttgtgtatcatacaaaagtgaacttttcaccattgatataatagtattttattcaatggtcaagattaaaga 5775950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 9440496 - 9440426
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatata 152  Q
    |||| ||||||  |||||||||| |  |||||||||||||||||| |||||  ||||||||||||||||||    
T  9440496 ggtgacatttaacatacacaagtaactctttttgtgtatcatacacaaatgaacttttcaccattgatata 9440426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 12226316 - 12226378
Alignment:
Q  109 ctttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgg 171  Q
    ||||||||||||  ||||||||||  ||||||||||||||| || |||||||  |||||||||    
T  12226316 ctttttgtgtatggtacaaaaatgaacttttcaccattgatttattattaaattattcaatgg 12226378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 9440448 - 9440500
Alignment:
Q  491 tttgtgtatgatacacaaaaagtataacttgtgtatcttaaacgtcatcctat 543  Q
    ||||||||||||||||||||||  | |||||||||| ||||| |||| |||||    
T  9440448 tttgtgtatgatacacaaaaagagttacttgtgtatgttaaatgtcaccctat 9440500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 26647 - 26520
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattga 181  Q
    ||||||||| | ||||||||||| | | |||||||||| || ||| |||  |||||||||||||||| ||| ||||||| |||||||||| |||||||||    
T  26647 ggtggcattaagaatacacaagtaagagtttttgtgtaccacacacaaacatgcttttcaccattgagatattattaaataattcaatggtcaagattga 26548  T
Q  182 agaatgggtacttgtctaatgggtttgg 209  Q
    |||||| |||||||| ||||||||||||    
T  26547 agaatgagtacttgtgtaatgggtttgg 26520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 18058368 - 18058295
Alignment:
Q  112 tttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaa 185  Q
    ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18058368 tttgtgtatcatacacaaatatgattttcaccattgatataatattaaacaattcaatggtcaagattgaagaa 18058295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 19078190 - 19078148
Alignment:
Q  82 ggtggcatttataatacacaagtgaaactttttgtgtatcata 124  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  19078190 ggtggcatttaggatacacaaatgaaactttttgtgtatcata 19078148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 22967649 - 22967731
Alignment:
Q  113 ttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtacttg 195  Q
    |||||||| ||||||||||| |||||| | ||||||| || |||||||  |||||||||  |||||| ||||| || ||||||    
T  22967649 ttgtgtatgatacaaaaatgagctttttatcattgatttattattaaattattcaatggttaagattaaagaagggctacttg 22967731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 23820744 - 23820662
Alignment:
Q  113 ttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaatgggtacttg 195  Q
    |||||||| ||||||||||| |||||| | ||||||| || |||||||  |||||||||  |||||| ||||| || ||||||    
T  23820744 ttgtgtatgatacaaaaatgagctttttatcattgatttattattaaattattcaatggttaagattaaagaagggctacttg 23820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 42558026 - 42557953
Alignment:
Q  112 tttgtgtatcatacaaaaatgtgcttttcaccattgatataatattaaacaattcaatgggcaagattgaagaa 185  Q
    ||||||||||||||  |||| || ||||||||||||||||||||||||| |||| ||||| | |||||||||||    
T  42558026 tttgtgtatcatacccaaatatgattttcaccattgatataatattaaataattgaatggtccagattgaagaa 42557953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 23693522 - 23693568
Alignment:
Q  139 tcaccattgatataatattaaacaattcaatgggcaagattgaagaa 185  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||||    
T  23693522 tcaccattgatttaatattaaaaaattcaatgatcaagattgaagaa 23693568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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