View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_low_16 (Length: 242)
Name: NF12714_low_16
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27507104 - 27506880
Alignment:
| Q |
1 |
ttttttgtgatgttcaaattgcggagtgctgaaattgtaattgataaagtaaccgatcttattgtcattacacaagaaggaaatatgaaagttgtttttc |
100 |
Q |
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| T |
27507104 |
ttttttgtgatgttcaaattgcggagtgctgaaattgtaattgataaagtaactgatcttattgtcattacacaagaaggaaatatgaaagttgtttttc |
27507005 |
T |
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| Q |
101 |
ttttaattcagataagtatttttcaatgtttccaataaaaaggtataatttttacaagctaaaaaattcctatggtacaaaatttctctataatctgtca |
200 |
Q |
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| T |
27507004 |
ttttaattcagataagtatttttcgatgtttccaataaaaaggtataatttttacaagttaaaaaatttgtatggtacaaaatttctctataatctgtca |
27506905 |
T |
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| Q |
201 |
gtatgctaaagtgtcagatttatgg |
225 |
Q |
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| T |
27506904 |
gtatgctaaagtgtcagatttatgg |
27506880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 27485681 - 27485900
Alignment:
| Q |
7 |
gtgatgttcaaattgcggagtgctgaaattgtaattgataaagtaaccgatcttattgtcattacacaagaaggaaatatgaaagttgtttttcttttaa |
106 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
27485681 |
gtgatgttcaaattgcggattgctgaaattgtaattgataaagtaactgatcttaccgtcactacacaagaacgaaatatgaaagttgtttttcttttga |
27485780 |
T |
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| Q |
107 |
ttcagataagtatttttcaatgtttccaataaaaaggtataatttttacaagctaaaaaattcctatggtacaaaatttctcta-taatctgtcagtatg |
205 |
Q |
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| T |
27485781 |
ttcagataactatttttctctgtttccaatgagaaggtataatttttacaagttaaaaaattcctatggtacaaaatttctctactaatctgtcagtatg |
27485880 |
T |
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| Q |
206 |
ctaaagtgtcagatttatgg |
225 |
Q |
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| T |
27485881 |
ctaaagtgtcagattcatgg |
27485900 |
T |
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