View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12714_low_18 (Length: 233)
Name: NF12714_low_18
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 27508533 - 27508739
Alignment:
| Q |
3 |
taagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattggg |
102 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508533 |
taagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattggg |
27508632 |
T |
|
| Q |
103 |
ttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacatccttcttact |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27508633 |
ttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatcaattacttagttacatccttcttact |
27508732 |
T |
|
| Q |
203 |
tttgata |
209 |
Q |
| |
|
||||||| |
|
|
| T |
27508733 |
tttgata |
27508739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 27503594 - 27503794
Alignment:
| Q |
7 |
aaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattgggtttt |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27503594 |
aaggtaggggacactctaagacaacaccacatgctacattatccctatgatctctatccttccaccccttcaataatagtttttctaggaattgggtttt |
27503693 |
T |
|
| Q |
107 |
gagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacatccttcttacttttg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| |||||| |||||||| |||||| |||| |
|
|
| T |
27503694 |
gagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaattcatt-gcatcatcaaatacttaattacatccatcttacatttg |
27503792 |
T |
|
| Q |
207 |
at |
208 |
Q |
| |
|
|| |
|
|
| T |
27503793 |
at |
27503794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 27476038 - 27475853
Alignment:
| Q |
7 |
aaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattgggtttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| || | ||||||||||||||||| ||| | |||| |||||| |
|
|
| T |
27476038 |
aaggtagggtacactctaagacaacaccccatgctaccttatccctgtgctctctatccatcaaacccttcaataatagtttctcttgaaatttggtttt |
27475939 |
T |
|
| Q |
107 |
gagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacat |
192 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||| || |||||||||| |
|
|
| T |
27475938 |
gagagaacttcaaaatctataaatacacttcctctctccttcataaacagcacaactgattggcatcatcaaatatttagttacat |
27475853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 27524191 - 27524394
Alignment:
| Q |
3 |
taagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattggg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||| | |||| || |
|
|
| T |
27524191 |
taagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgatctatatccttcaaccccttcaataatagtttttcttgaaatttgg |
27524290 |
T |
|
| Q |
103 |
ttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacatccttcttact |
202 |
Q |
| |
|
||||||| ||||| ||| |||||| ||| ||||| |||||||||||||||||| | |||||||| || | ||||| || ||||||||||||||| ||| |
|
|
| T |
27524291 |
gtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacagaaaaactcatt-gcattatcaaatatttagttacatccttcataca |
27524389 |
T |
|
| Q |
203 |
tttga |
207 |
Q |
| |
|
||||| |
|
|
| T |
27524390 |
tttga |
27524394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 27468809 - 27468624
Alignment:
| Q |
3 |
taagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattggg |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| || | ||||||||||||||||||| | | |||| | |
|
|
| T |
27468809 |
taagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaacccttcaataatagtttttgttgaaatttga |
27468710 |
T |
|
| Q |
103 |
ttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagtt |
188 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||| || ||||||| || |||||| |
|
|
| T |
27468709 |
ttttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacaggacaactcattggcatcatcaaatatttagtt |
27468624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 27514552 - 27514736
Alignment:
| Q |
3 |
taagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattggg |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| || | ||||||||||||||||| ||| | |||| || |
|
|
| T |
27514552 |
taagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaacccttcaataatagtttctcttgaaatttgg |
27514651 |
T |
|
| Q |
103 |
ttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagtta |
189 |
Q |
| |
|
|| ||||| ||||||||| |||||||||||||||| ||||||||||| || ||||||||||||| || ||||||| || ||||||| |
|
|
| T |
27514652 |
ttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--agcacaactcattggcatcatcaagtatttagtta |
27514736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University