View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_low_3 (Length: 448)
Name: NF12714_low_3
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 34145089 - 34145504
Alignment:
| Q |
18 |
gaaacaatcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145089 |
gaaacaatcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattc |
34145188 |
T |
|
| Q |
118 |
aacctactttgaaggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcat |
217 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34145189 |
aacctaccttgaaggtcatttgctggacccgcacagccatggatagggtccctcaaccaggcatcagcttcatacaccaaggattcaacagcttgttcat |
34145288 |
T |
|
| Q |
218 |
gatgtgaaacatctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagta |
317 |
Q |
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| T |
34145289 |
gatgtgaaacatccaattttttcaacagattagtcacatttctcattccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagta |
34145388 |
T |
|
| Q |
318 |
aggagctaagacacaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagc |
417 |
Q |
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| T |
34145389 |
aggagctaagacacaggtaaggtggcacttcctatggagatgcttgcaagctgcacatgggcgaataatctctctatccattgctgcacattaaattagc |
34145488 |
T |
|
| Q |
418 |
aaattcaattattcat |
433 |
Q |
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| T |
34145489 |
aaattcaattattcat |
34145504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 34155429 - 34155842
Alignment:
| Q |
18 |
gaaacaatcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattc |
117 |
Q |
| |
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|||||||||||||||| |||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |||||||| |
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| T |
34155429 |
gaaacaatcaggaaagccgagaacaaattcaacaatctgaggattgaggtatttggccagttcgttcttcacactctttagttccatttgaacttcattc |
34155528 |
T |
|
| Q |
118 |
aacctactttgaaggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcat |
217 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| || ||||||| ||||||||| | |
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| T |
34155529 |
aacctacgttgaaggtcctttgctggacccgcacaaccatagactgggtccctcaacctggcctcagcctcatacacgaatgattcaatagcttgttcgt |
34155628 |
T |
|
| Q |
218 |
gatgtgaaacatctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagta |
317 |
Q |
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| T |
34155629 |
gatgtgaagcatcaacttttttcaacatattcgacacattgttctttccaaacacagagtgtaccttgatgaaacgctctgggttgtcaggtggaaagta |
34155728 |
T |
|
| Q |
318 |
aggagctaagacacaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatcc---ataactgcacattaaatt |
414 |
Q |
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| T |
34155729 |
aggagcaaggtcacagcttgagtcgcactcctgacggagatgcttgcatgctgcgcacgggcgaataatctctcttgccattattactgcacattaaatt |
34155828 |
T |
|
| Q |
415 |
agcaaattcaatta |
428 |
Q |
| |
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| T |
34155829 |
aacaaattcaatta |
34155842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 34140881 - 34140954
Alignment:
| Q |
355 |
agatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagcaaattcaatta |
428 |
Q |
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||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
34140881 |
agatgcttgcacactgcacacaggcgaataatctcttttgccataactgcacattaaattaggaaattcaatta |
34140954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 34134509 - 34134582
Alignment:
| Q |
356 |
gatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaat-tagcaaattcaatta |
428 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| ||||||||| | ||||||| || |||||||||||| |
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| T |
34134509 |
gatgcttgcacgctgcacacgggcgaataatctcttctgccataactgtaaattaaatataacaaattcaatta |
34134582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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