View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12714_low_4 (Length: 430)
Name: NF12714_low_4
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 38706837 - 38707021
Alignment:
| Q |
12 |
agagacaaaaacacccaacttaaagactcc----aaaccttagcccaccctaagagaacccaaataatccacaacaattccctcctatcagtaaggacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38706837 |
agagacaaaaacacccaacttaaagactccgaccaaaccttagcccaccctaagggaacccaaat---ccacaacaattccctcctatcagtaaggacca |
38706933 |
T |
|
| Q |
108 |
acagccgctgagaccacaaagagatcaacccctaaaccatgatctatctaccagtattattctaatgaaaacggaactatcaagcttgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
38706934 |
acagccgctgagaccacaaagagatcaa-ccctaaaccatgatctatctaccagtattattctaatgaaaatggagctatcaagcttgt |
38707021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 38707123 - 38707239
Alignment:
| Q |
258 |
ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaactttgtgctcttttatttattact |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707123 |
ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaactttgtgctcttttatttattact |
38707222 |
T |
|
| Q |
358 |
cctccgttccttttcaa |
374 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38707223 |
cctccgttccttttcaa |
38707239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University