View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12714_low_6 (Length: 345)
Name: NF12714_low_6
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12714_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 96 - 335
Target Start/End: Original strand, 52725318 - 52725558
Alignment:
| Q |
96 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgannnnnnn-attaatttac |
194 |
Q |
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| T |
52725318 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgattttttttattaatttac |
52725417 |
T |
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| Q |
195 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
294 |
Q |
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| T |
52725418 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
52725517 |
T |
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| Q |
295 |
agtcaaatgcatcattttccttactctcttcacaatttctt |
335 |
Q |
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| T |
52725518 |
agtcaaatgcatcattttccttactctcttcacaatttctt |
52725558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 52724438 - 52724522
Alignment:
| Q |
19 |
atttcacccaagcaaaacaaacgttcaaattgatacaccaatttgaataaaaacaagattaagactcagctttgagcagtgtgat |
103 |
Q |
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| T |
52724438 |
atttcacccaagcaaaacaaacgttcaaattgatacaccaatttgaataaaaacaagattaagactcagctttgagcagtgtgat |
52724522 |
T |
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